PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00081930001

Common Name

GSBRNA2T00081930001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 289aa MW: 31798.5 Da PI: 9.0362

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00081930001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.7	4.9e-32	64	119	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++vrY+eClkNhAa++Gg + DGCgEfmps geegt++al+CaAC+CHRnFHR+ev+ GSBRNA2T00081930001 64 TAVRYRECLKNHAANVGGSVHDGCGEFMPS-GEEGTIEALRCAACDCHRNFHRKEVD 119 579************************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-27	60	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.8E-29	66	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.8E-30	67	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.03	68	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.32E-20	211	282	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-31	214	282	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.616	219	283	IPR001356	Homeobox domain
TIGRFAMs	TIGR01565	1.2E-29	221	278	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDMRSHEMIE RRRDDNGNNG VGSIANEDNV NGNNNNNTRV SSQTLDHHQS KSPSSFVISA 60 AAKTAVRYRE CLKNHAANVG GSVHDGCGEF MPSGEEGTIE ALRCAACDCH RNFHRKEVDG 120 VGSSDVIAHH HRHHHHQYGG GGGGGRRPPP PNMMLNPLML PPPPNYTPMH HHKYGMSPPG 180 GAGMVTPMSS SSEDLNMYGQ SSGEHGGGAA AGQMAFSMSS KKRFRTKFTT EQKERMMEFA 240 EKLGWRMNKQ DEEELKRFCG EIGVKRQVFK VWMHNNKNNA RKPPPSTV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-23	220	279	16	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.3826	0.0	flower\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269\|PubMed:16428600, ECO:0000269\|PubMed:21059647, ECO:0000269\|PubMed:21779177}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00081930001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269\|PubMed:21779177}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189493	0.0	AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013699323.1	1e-165	zinc-finger homeodomain protein 5-like
Swissprot	Q9FRL5	1e-119	ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBL	A0A078I7P3	0.0	A0A078I7P3_BRANA; BnaA07g31990D protein
STRING	Bra015857.1-P	1e-162	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7279	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	1e-109	homeobox protein 33

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]