![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00081698001 | ||||||||
Common Name | GSBRNA2T00081698001, LOC106346587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 312aa MW: 35112.2 Da PI: 7.5005 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.8 | 3.9e-31 | 92 | 147 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++YkeClkNhAa++Gg+a+DGCgEfmps ge+g+++al+C+ C+CHRnFHR+eve e GSBRNA2T00081698001 92 IKYKECLKNHAAAMGGNATDGCGEFMPS-GEDGSIEALTCSVCNCHRNFHRKEVEGE 147 79*************************9.999*********************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.9E-28 | 92 | 144 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-29 | 92 | 154 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-30 | 93 | 144 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.926 | 94 | 143 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.97E-19 | 211 | 276 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-29 | 212 | 277 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.8E-27 | 218 | 274 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 312 aa Download sequence Send to blast |
MEIASQEDHD MPVPLSTTFV GSGGGHGHMI HHHHDHHASD SAPPTHNHNN ITTTQPPQMQ 60 LHGNGHGNSH DHHHHQDPHH VGYNAIIKKP IIKYKECLKN HAAAMGGNAT DGCGEFMPSG 120 EDGSIEALTC SVCNCHRNFH RKEVEGETTA TAISSYHQPP PPRKLMVNHH NIRSAMPHQM 180 IMPIGVSNYR YMHNLESGDF MEQDGVTTAS RPPPYNQKKR FRTKFTPEQK EKMLSFAEKV 240 GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKLHFSNK NTSNNINLEG NDNDKINNVN 300 NVDVSGNNDM I* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-24 | 219 | 274 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00081698001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB493456 | 0.0 | AB493456.1 Arabidopsis thaliana At1g14440 mRNA for hypothetical protein, partial cds, clone: RAAt1g14440. | |||
GenBank | AY074266 | 0.0 | AY074266.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds. | |||
GenBank | AY096738 | 0.0 | AY096738.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F14L17 | 0.0 | AC012188.2 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022576445.1 | 0.0 | zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 1e-176 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A078I5A4 | 0.0 | A0A078I5A4_BRANA; BnaA06g09270D protein | ||||
TrEMBL | A0A3P5YDN4 | 0.0 | A0A3P5YDN4_BRACM; Uncharacterized protein | ||||
STRING | Bra026219.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3339 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-140 | homeobox protein 31 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106346587 |
Publications ? help Back to Top | |||
---|---|---|---|
|