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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00081189001 | ||||||||
Common Name | GSBRNA2T00081189001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 271aa MW: 30694.7 Da PI: 7.7882 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.6 | 1.2e-37 | 74 | 133 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny++sqPr+fC++C+ryWt GG++r vPvG+grrknk + GSBRNA2T00081189001 74 PDKILPCPRCNSADTKFCYYNNYNVSQPRHFCRNCQRYWTSGGSMRTVPVGSGRRKNKGW 133 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-28 | 74 | 131 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.6E-31 | 76 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.332 | 78 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 80 | 116 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MEYSSSSSFP SLGLYMMNNQ SATDNSEQDD TTLQMSSDLN KESKETSENN YDKHSEITTT 60 TTTSEEKTTE LKKPDKILPC PRCNSADTKF CYYNNYNVSQ PRHFCRNCQR YWTSGGSMRT 120 VPVGSGRRKN KGWVSTDLID INSKNNSNDY NSSSTKILSF ESSDSWVSEK GQHRSSDSKM 180 TADSVSQDFN KFQGFLPAQV TSSVSPPWPY HQYPLNPSFY HIPVCWGYTV PVSSTLETST 240 CLGKRTRGEA SHENVREQRH FRESKVKFTL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00081189001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189385 | 1e-124 | AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009110034.1 | 1e-139 | PREDICTED: dof zinc finger protein DOF1.3-like | ||||
Swissprot | Q9LQX4 | 1e-119 | DOF13_ARATH; Dof zinc finger protein DOF1.3 | ||||
TrEMBL | A0A078I6F1 | 0.0 | A0A078I6F1_BRANA; BnaCnng12240D protein | ||||
TrEMBL | A0A0D3DR94 | 0.0 | A0A0D3DR94_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g076530.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14082 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26790.1 | 1e-105 | Dof family protein |
Publications ? help Back to Top | |||
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