PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00080704001 | ||||||||
Common Name | GSBRNA2T00080704001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 74aa MW: 8054.75 Da PI: 10.7779 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 144.1 | 2.7e-45 | 5 | 73 | 2 | 70 |
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + +k+e+kGlnPGlivllv+ggll++flvgn+ily+yaqknlPPrkkkPvskkk+k+eklkqGv+vPGe GSBRNA2T00080704001 5 FSGKIESKGLNPGLIVLLVIGGLLVTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKLKQGVQVPGE 73 5689****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 6.4E-40 | 9 | 73 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MADEFSGKIE SKGLNPGLIV LLVIGGLLVT FLVGNFILYT YAQKNLPPRK KKPVSKKKMK 60 KEKLKQGVQV PGE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.2444 | 1e-104 | flower| microspore-derived embryo| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00080704001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009146906.1 | 3e-44 | PREDICTED: DNA-binding protein S1FA3 | ||||
Refseq | XP_022575570.1 | 3e-44 | DNA-binding protein S1FA3 | ||||
Swissprot | Q42337 | 1e-18 | S1FA2_ARATH; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A078I1J2 | 7e-43 | A0A078I1J2_BRANA; BnaA05g28810D protein | ||||
TrEMBL | A0A397ZID1 | 7e-43 | A0A397ZID1_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6FBX6 | 7e-43 | A0A3P6FBX6_BRAOL; Uncharacterized protein | ||||
TrEMBL | M4ELW4 | 7e-43 | M4ELW4_BRARP; Uncharacterized protein | ||||
STRING | Bra029784.1-P | 1e-43 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2823 | 27 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09735.1 | 2e-09 | S1FA-like DNA-binding protein |
Publications ? help Back to Top | |||
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