PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00080435001 | ||||||||
Common Name | GSBRNA2T00080435001, LOC106449332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 29750.9 Da PI: 8.4913 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.5 | 2.7e-14 | 73 | 125 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r++h e+Er+RR+++ s f Lr +lP ++K s ++ + +Av+YIk+L+ GSBRNA2T00080435001 73 KRAKHREIERQRRQEVTSLFKHLRYILPAqY---VKGKRSSSDHVNEAVNYIKDLE 125 79***************************66...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.72E-10 | 70 | 129 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-14 | 70 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.522 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.4E-12 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-11 | 73 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0061 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MAFPSSSSFT NDFAYENELD FSSLLTPSTF ISFQDPNPSN PIIHNTENGG RQRIRETTVT 60 DETPREDVEP KNKRAKHREI ERQRRQEVTS LFKHLRYILP AQYVKGKRSS SDHVNEAVNY 120 IKDLEKKIKE VSKKRDRIKR SITHPPSAGY CPIRSLAASC SSPSSLSSYC SCVGDTHIDF 180 KVMTCLVGIE VVASCCFRHE SCLSSVLQLL VHEQCFNVVS CISTRLHLRF IHTIVCEVEK 240 GIEINFSELQ EKIIKMGRHR A* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 84 | KRAKHREIERQRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00080435001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584847.1 | 0.0 | PREDICTED: transcription factor bHLH55-like | ||||
Refseq | XP_022559613.1 | 0.0 | transcription factor bHLH55-like | ||||
Swissprot | Q9LN95 | 1e-123 | BH055_ARATH; Transcription factor bHLH55 | ||||
TrEMBL | A0A078JTU3 | 0.0 | A0A078JTU3_BRANA; BnaCnng60760D protein | ||||
TrEMBL | A0A0D3C9L6 | 0.0 | A0A0D3C9L6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6F4P8 | 0.0 | A0A3P6F4P8_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g016800.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6228 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12540.1 | 1e-118 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106449332 |
Publications ? help Back to Top | |||
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