PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00080249001
Common NameGSBRNA2T00080249001, LOC106391872
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 497aa    MW: 55432.7 Da    PI: 6.7997
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00080249001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.94.1e-27277330256
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          ++++Wt+eLH++Fv+av+qL G ++A+P++ilelmkv+gLt+++v+SHLQk+R++
  GSBRNA2T00080249001 277 KKVDWTQELHKKFVQAVDQL-GVDQAIPSRILELMKVDGLTRHNVASHLQKFRMH 330
                          689*****************.********************************96 PP
2Response_reg31.11.2e-113512815109
                          HHHHHHTTCEEEEEESSHHHHHHHH.HHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS- CS
         Response_reg  15 rqalekegyeevaeaddgeealell.kekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpf 102
                          r+ le+ +y +v++++dg+eal  + k ++ +++ ++ ++ ++ +  e +k +++++++lp i+++     +++ +++ +Ga +fl Kp 
  GSBRNA2T00080249001  35 RSKLESMDY-IVTTFTDGTEALSAViKSLEsFHIAIVEVNTSDEN--ESFKFLEAAKDHLPTIMISNDHCITTTMKCIALGAVEFLQKPL 121
                          5668999**.************999544446*****999988865..778888888899*******9999******************** PP

                          -HHHHHH CS
         Response_reg 103 dpeelvk 109
                          +pe+l +
  GSBRNA2T00080249001 122 SPEKLKN 128
                          ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.7E-1517141No hitNo description
SuperFamilySSF521721.27E-1317135IPR011006CheY-like superfamily
PROSITE profilePS5011021.58720134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-734128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.07E-838133No hitNo description
PROSITE profilePS5129417.586273332IPR017930Myb domain
SuperFamilySSF466892.42E-18274333IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-25275332IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24277330IPR006447Myb domain, plants
PfamPF002495.1E-7279327IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MVFTSNDISK WENFPKGLRV LLLDCGDGIS AAETRSKLES MDYIVTTFTD GTEALSAVIK  60
SLESFHIAIV EVNTSDENES FKFLEAAKDH LPTIMISNDH CITTTMKCIA LGAVEFLQKP  120
LSPEKLKNIW QHVVHKAFND GGTDVSESLK PVKESVVSML HLDTDMTIDE KDSAPSTPQL  180
KQVSRLLDGG DRQENINSST EKENMEDQDI GESKSVDTTN HDNNVIVKEE KEDGGTGDMK  240
SEKTDSVKFQ KKEDETTKHN NKSTGIKNLS GNKPSRKKVD WTQELHKKFV QAVDQLGVDQ  300
AIPSRILELM KVDGLTRHNV ASHLQKFRMH RRNILPKEDH NHRWIQSREN HRKIQRQYNG  360
FQQQHRPVMA YPVWGLPGVH PPGAVPPLWP PPLQSSGQLP PWHWRPPYPT VNGNAWGCPV  420
VQPVTGTFTT PPATQLDEEM VDQVVKEAIS KPWLPLPLGL KPPSAESVLA ELSRQGISAV  480
PSSSSSCPIN GSRRLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-17278329758ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.179200.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00080249001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013688053.10.0two-component response regulator-like APRR2
RefseqXP_022574245.10.0two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A078I5T40.0A0A078I5T4_BRANA; BnaC01g10560D protein
STRINGBo1g019180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]