PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00079558001

Common Name

GSBRNA2T00079558001, LOC106374489

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 297aa MW: 32971.7 Da PI: 7.8092

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00079558001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.5	3.6e-30	131	189	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ver+ ++p+ ++itY++eH+he GSBRNA2T00079558001 131 SDAWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERNPQNPEKFTITYTNEHDHE 189 7************************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-30	116	191	IPR003657	WRKY domain
PROSITE profile	PS50811	32.638	125	191	IPR003657	WRKY domain
SuperFamily	SSF118290	9.42E-26	125	191	IPR003657	WRKY domain
SMART	SM00774	4.0E-35	130	190	IPR003657	WRKY domain
Pfam	PF03106	5.7E-25	132	188	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDEGDLKAVV RGYSSSSDVF SGKSSDEFSP SFCLPVETAS LYEQEAEKIG LDELGVLYKP 60 FYPSSTQTLT NSVSVPEDSR CFRDDKKHRT HGCLLASGSR VNRIRIPESW KSKKNQQKRV 120 VEQVNEENLL SDAWAWRKYG QKPIKGSPYP RSYYRCSSSK GCLARKQVER NPQNPEKFTI 180 TYTNEHDHEI PTRRNSLAGT TRAKSSKPKP CITKKSGKQV VSSPTSNPVI TSGDESSVVV 240 QATEVAEMST YLTTGEIEGT SKSLPTDLSS DTGHIPSGFD EILNSPEFIN GYLWDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-19	121	191	8	77	Probable WRKY transcription factor 4
2lex_A	1e-19	121	191	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269\|PubMed:11875555}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00079558001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269\|PubMed:11875555}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013669957.1	0.0	probable WRKY transcription factor 29
Swissprot	Q9SUS1	1e-158	WRK29_ARATH; Probable WRKY transcription factor 29
TrEMBL	A0A078HZR5	0.0	A0A078HZR5_BRANA; BnaA01g13230D protein
TrEMBL	A0A398AT69	0.0	A0A398AT69_BRACM; Uncharacterized protein
STRING	Bra013708.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6090	25	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23550.1	1e-140	WRKY family protein

Link Out ? help Back to Top
Entrez Gene	106374489

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Liu XQ, et al. OsWRKY03, a rice transcriptional activator that functions in defense signaling pathway upstream of OsNPR1. Cell Res., 2005. 15(8): p. 593-603 [PMID:16117849] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Yi SY,Shirasu K,Moon JS,Lee SG,Kwon SY The activated SA and JA signaling pathways have an influence on flg22-triggered oxidative burst and callose deposition. PLoS ONE, 2014. 9(2): p. e88951 [PMID:24586453] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Cambiagno DA,Lonez C,Ruysschaert JM,Alvarez ME The synthetic cationic lipid diC14 activates a sector of the Arabidopsis defence network requiring endogenous signalling components. Mol. Plant Pathol., 2015. 16(9): p. 963-72 [PMID:25727690] Gkizi D, et al. The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae. Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23 [PMID:26780421] Li Y,Williams B,Dickman M Arabidopsis B-cell lymphoma2 (Bcl-2)-associated athanogene 7 (BAG7)-mediated heat tolerance requires translocation, sumoylation and binding to WRKY29. New Phytol., 2017. 214(2): p. 695-705 [PMID:28032645] Wang S, et al. Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22. Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322 [PMID:29090631]