PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00079260001

Common Name

GSBRNA2T00079260001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 374aa MW: 42415.1 Da PI: 6.5157

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00079260001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.3	1.8e-05	254	297	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er R +ri + + L +llP+ k s iL + v+++k Lq GSBRNA2T00079260001 254 TERERKQRIDDNIKALAKLLPHE----VKEDSSEVILNEIVDHVKLLQ 297 7*******************9....566999**********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.14E-7	245	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-6	245	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.578	246	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MVPLLRQTGN GKSSEGQFIP QASQMNFNTV FQSLTELFPQ IDARILRTVA REHPTDADEA 60 AAVVISEVVP LFPQEWEDHV RKRILHHLPL CKVEPETQRD DDALSQWLHP SHLPQSYLAL 120 LNDEEEEEEK ATPDLKPLLD YAVKKVVLPS RDAATGARRE VRTIYSASNK TASSVVKPSI 180 RVQSQTNNEQ LSGSSNKVPV AGRSSRKAAH PWSNYSEKLR SWKKRSSDFS QLHGQCKYVP 240 SWQSNQRKCK SYTTERERKQ RIDDNIKALA KLLPHEVKED SSEVILNEIV DHVKLLQLEM 300 KELSLNRLGG EPISHPMTFI EGFGHYIHHE EMMTKPLEEM MEDLLANDPD AVARLLESKG 360 LYLMPLSSVQ DLC*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MVPLLRQTGN GKSSEGQFIP QASQMNFNTV FQSLTELFPQ IDARILRTVA REHPTDADEA  60
AAVVISEVVP LFPQEWEDHV RKRILHHLPL CKVEPETQRD DDALSQWLHP SHLPQSYLAL  120
LNDEEEEEEK ATPDLKPLLD YAVKKVVLPS RDAATGARRE VRTIYSASNK TASSVVKPSI  180
RVQSQTNNEQ LSGSSNKVPV AGRSSRKAAH PWSNYSEKLR SWKKRSSDFS QLHGQCKYVP  240
SWQSNQRKCK SYTTERERKQ RIDDNIKALA KLLPHEVKED SSEVILNEIV DHVKLLQLEM  300
KELSLNRLGG EPISHPMTFI EGFGHYIHHE EMMTKPLEEM MEDLLANDPD AVARLLESKG  360
LYLMPLSSVQ DLC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00079260001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013729769.1	0.0	uncharacterized protein LOC106433491 isoform X1
Refseq	XP_022567698.1	0.0	uncharacterized protein LOC106433491 isoform X2
TrEMBL	A0A078FNV5	0.0	A0A078FNV5_BRANA; BnaC03g49220D protein
TrEMBL	A0A3P6BB59	0.0	A0A3P6BB59_BRAOL; Uncharacterized protein
STRING	Bo3g100520.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12956	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	4e-14	LJRHL1-like 2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]