PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00078582001 | ||||||||
Common Name | GSBRNA2T00078582001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARR-B | ||||||||
Protein Properties | Length: 749aa MW: 83024.4 Da PI: 6.9474 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 69.8 | 4.4e-22 | 195 | 247 | 1 | 54 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 k +l W+ LH+ F++a++++ G +kA+Pk+ile+m+v Lt+e+v+SHLQkYR GSBRNA2T00078582001 195 KSKLSWSDYLHDLFLQAIHHI-GLDKAVPKKILEFMDVSYLTRENVASHLQKYR 247 679******************.******************************** PP | |||||||
2 | Response_reg | 68.3 | 3.4e-23 | 18 | 132 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTC....EEEE..EESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS Response_reg 1 vlivdDeplvrellrqalekegy....eeva..eaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahge 82 +++vdD+p+ re++ ++le+++y +e++ +++d++eal +l +++++Dli++D mpgm+Gl+l ++i+++ + p+iv+++ + GSBRNA2T00078582001 18 IMVVDDDPVSREIMSRMLERSKYrdpsMEITviAVRDAREALSTLkiQRNNIDLIVTDYYMPGMNGLQLKQQITRQFGNFPVIVMSSDTN 107 89*****************8777555533333599********99445555**********************99999********7766 PP HHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 83 eedalealkaGakdflsKpfdpeelvk 109 +e l G fl Kp++p +l k GSBRNA2T00078582001 108 --KEQESLACGSVCFLPKPIKPTDLPK 132 ..67899****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 2.4E-27 | 15 | 143 | No hit | No description |
SuperFamily | SSF52172 | 1.41E-25 | 16 | 147 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 5.9E-22 | 16 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 34.244 | 17 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.3E-20 | 18 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.07E-24 | 19 | 130 | No hit | No description |
SuperFamily | SSF46689 | 7.53E-16 | 193 | 252 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 193 | 252 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-24 | 195 | 249 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence Send to blast |
MTFAQSLNNQ SSVLRINIMV VDDDPVSREI MSRMLERSKY RDPSMEITVI AVRDAREALS 60 TLKIQRNNID LIVTDYYMPG MNGLQLKQQI TRQFGNFPVI VMSSDTNKEQ ESLACGSVCF 120 LPKPIKPTDL PKIYQVAFTY KRKGKSISRT EHNHMDTNVS IPQQIQLLPE QANVSRTKKN 180 KKFSSRSDSR SPSKKSKLSW SDYLHDLFLQ AIHHIGLDKA VPKKILEFMD VSYLTRENVA 240 SHLQKYRNFL RKVAESSGML HGRGMEPYHS NYTTSSSWYD TGLNNKSSYS KPRHGLGQSR 300 LLSNTCEPVR FNQMPYNHMN RLSTYEPHRT GSNLTMPIKS NLSFSTQPLQ NEGSRSFLEP 360 TVTANKTGQT SQVLGLGQHG MSATNDNNFI NNMMRSYGRI SIYASSTSNQ PGMNSHGSST 420 PNQPGMSSYG SVSPNQLGMS SHGSLTPSQR GMSSYESLTS NQPGMSSHGS LTPTQPGMIS 480 RGSLTPTQQG ISSYGILSPS QLGLSTQPGM SNQGSLGPTQ RGMGMSNYGS LTSYQPALST 540 HGSLFPNQPG ISSHISLPPT QQGMSSFGSL TTNHSGMSSY EILTPAQPGP SHISYGLLLD 600 NENTAYKPQP HASTTIQPDN LSLYDDLGNI NEIPFDLSNF DFDHDKQQEE AVSANKFEIP 660 ANLETELNQT SSLEEDGDWT FLNINQGHFN EKTSNTFAAP EMNDPTFNKN PNHAQEQDVP 720 DFDWSLLDFV NLANENDFMD SMFTNDMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-17 | 191 | 254 | 1 | 64 | ARR10-B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in siliques. Also found in germinating seedlings, stems, flowers and roots, but not in rosette leaves. {ECO:0000269|PubMed:15173562, ECO:0000269|Ref.3}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00078582001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009125679.1 | 0.0 | PREDICTED: putative two-component response regulator ARR21 isoform X1 | ||||
Swissprot | Q9LYP5 | 1e-176 | ARR21_ARATH; Putative two-component response regulator ARR21 | ||||
TrEMBL | A0A078FP07 | 0.0 | A0A078FP07_BRANA; BnaC02g01700D protein | ||||
STRING | Bo2g007540.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6113 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07210.1 | 1e-172 | response regulator 21 |
Publications ? help Back to Top | |||
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