PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077765001
Common NameGSBRNA2T00077765001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 519aa    MW: 57914.4 Da    PI: 6.3464
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077765001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.78.1e-26192245155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr+ Wt eLH++F+ av++L G ekA Pk+ilelm+v+ Lt+e+v+SHLQk+R+
  GSBRNA2T00077765001 192 KPRVLWTRELHNKFLAAVDHL-GVEKAQPKKILELMNVDKLTRENVASHLQKFRS 245
                          79*******************.********************************7 PP
2Response_reg88.81.5e-29191271109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vdD+++ +++l+++l + +y +v+++d+++ alell+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++++++ +
  GSBRNA2T00077765001  19 VLAVDDDQTCLRILETLLHRCQY-HVTTTDSAQTALELLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMK 106
                          799********************.***************888888*******************87754.558***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +k Ga d+l Kp+ +eel +
  GSBRNA2T00077765001 107 GVKHGACDYLLKPVRIEELKN 127
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.26E-3716137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.2E-4316169No hitNo description
SMARTSM004482.1E-3417129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.8718133IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-2619127IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.94E-3020132No hitNo description
Gene3DG3DSA:1.10.10.601.1E-27189250IPR009057Homeodomain-like
PROSITE profilePS5129414.564189248IPR017930Myb domain
SuperFamilySSF466892.42E-19190249IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-24192245IPR006447Myb domain, plants
PfamPF002493.0E-6196243IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MTVEQDFEAV DQFPVGMRVL AVDDDQTCLR ILETLLHRCQ YHVTTTDSAQ TALELLRENK  60
NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD PKYVMKGVKH GACDYLLKPV  120
RIEELKNIWQ HVVRKSKFKK MKSIVINDDH SQGNSDQNGV KANRKRKDQF EEVEEEDEER  180
GNENDDPTAQ KKPRVLWTRE LHNKFLAAVD HLGVEKAQPK KILELMNVDK LTRENVASHL  240
QKFRSALKKI TNEANQQANM AAIDSHFMQM SALKGLGGFH NQRQIPLGSG QFHGGAATMR  300
HYPLGRLNSF GGVFPHVSSS LPRNHNDGGY VLQGMPIPPL DDLNNKAFPS FTSQQSSLMV  360
APNNQLVLQG HQQSSYPSLN PGLSPHFEIN KRLDDWSNAL LSTNIPQSGV HSKPDALEWN  420
HFCNSDAAQA GFIDPLQMKQ QPANNLGPMT DAQLLRSSNP IEGLFVGQQK LENGSMPSNA  480
GSLDDIVNSM TPKEQSQAEL FEGDLGFGWH NSSLRTCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-31188251164ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and leaves. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077765001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535330.0AK353533.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-C17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716809.20.0LOW QUALITY PROTEIN: two-component response regulator ARR10-like
SwissprotO493970.0ARR10_ARATH; Two-component response regulator ARR10
TrEMBLA0A078FG870.0A0A078FG87_BRANA; Two-component response regulator
TrEMBLA0A3P6A8Z10.0A0A3P6A8Z1_BRACM; Two-component response regulator
STRINGBra023972.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.10.0response regulator 10
Publications ? help Back to Top
  1. Hill K,Schaller GE
    Enhancing plant regeneration in tissue culture: a molecular approach through manipulation of cytokinin sensitivity.
    Plant Signal Behav, 2013. 8(10): p. doi: 10.4161/psb.25709
    [PMID:23887495]
  2. Ramireddy E,Chang L,Schmülling T
    Cytokinin as a mediator for regulating root system architecture in response to environmental cues.
    Plant Signal Behav, 2014. 9(1): p. e27771
    [PMID:24509549]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Choi SH, et al.
    Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis.
    Sci Rep, 2014. 4: p. 7197
    [PMID:25425016]
  5. Cortleven A, et al.
    Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes.
    Plant Physiol., 2016. 172(1): p. 464-78
    [PMID:27388681]
  6. Street IH, et al.
    Cytokinin acts through the auxin influx carrier AUX1 to regulate cell elongation in the root.
    Development, 2016. 143(21): p. 3982-3993
    [PMID:27697901]
  7. Wang Y,Wu Y,Yu B,Yin Z,Xia Y
    EXTRA-LARGE G PROTEINs Interact with E3 Ligases PUB4 and PUB2 and Function in Cytokinin and Developmental Processes.
    Plant Physiol., 2017. 173(2): p. 1235-1246
    [PMID:27986866]
  8. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  9. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  10. Zubo YO, et al.
    Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(29): p. E5995-E6004
    [PMID:28673986]
  11. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  12. Rong XF, et al.
    Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 756-764
    [PMID:29186581]
  13. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]