PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077584001
Common NameGSBRNA2T00077584001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 102aa    MW: 11227.3 Da    PI: 10.8287
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077584001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.2e-183366134
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                         Cs C+ttkTp+WR gp+g+k+LCnaCG++  k++
  GSBRNA2T00077584001 33 CSECKTTKTPMWRGGPSGPKSLCNACGIRLMKQR 66
                         ****************************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.65E-142667No hitNo description
SMARTSM004015.3E-162783IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.9912760IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-153167IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.21E-93367No hitNo description
PROSITE patternPS0034403358IPR000679Zinc finger, GATA-type
PfamPF003205.9E-163366IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MLYKNIQRFL ATVVSKGALI TKMEEEKKTV RCCSECKTTK TPMWRGGPSG PKSLCNACGI  60
RLMKQRRSEL LGIRIIHSHK AYKKINSSPS SLSFSHGGVS L*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077584001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937612e-44AB493761.1 Arabidopsis thaliana At5g26930 mRNA for hypothetical protein, partial cds, clone: RAAt5g26930.
GenBankAY0867782e-44AY086778.1 Arabidopsis thaliana clone 27625 mRNA, complete sequence.
GenBankBT0247892e-44BT024789.1 Arabidopsis thaliana At5g26930 gene, complete cds.
GenBankDQ4469892e-44DQ446989.1 Arabidopsis thaliana clone pENTR221-At5g26930 zinc finger family protein (At5g26930) mRNA, complete cds.
GenBankDQ6533102e-44DQ653310.1 Arabidopsis thaliana clone 0000012664_0000009184 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597259.12e-46PREDICTED: GATA transcription factor 23-like
SwissprotQ8LC594e-35GAT23_ARATH; GATA transcription factor 23
TrEMBLA0A078JT081e-67A0A078JT08_BRANA; BnaAnng28230D protein
STRINGBra009926.1-P2e-51(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144841622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-34GATA transcription factor 23
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Murphy E, et al.
    RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation.
    J. Exp. Bot., 2016. 67(16): p. 4863-75
    [PMID:27521602]