PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076922001
Common NameGSBRNA2T00076922001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 329aa    MW: 37224 Da    PI: 8.5448
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076922001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-30112168258
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                          dDgy+WrKYGqK++k+s++prsY++Ct + C++kk+vers +dp++ +itYeg H h
  GSBRNA2T00076922001 112 DDGYKWRKYGQKSIKNSPNPRSYFKCTNSICNAKKQVERSIDDPNTYIITYEGFHLH 168
                          8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-28105168IPR003657WRKY domain
PROSITE profilePS5081126.544106168IPR003657WRKY domain
SuperFamilySSF1182909.29E-26109168IPR003657WRKY domain
SMARTSM007741.2E-35111170IPR003657WRKY domain
PfamPF031064.4E-25112168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAEEEVSEWK TMYGSHALDE FIVNEPHLLF LPQEHLRLMP KENSIINKLV SSKYDSSPRL  60
QDITNALAMV EPLTHSVRQI SESTVPILGR STLSKVDRYT LKVKNNSNGM SDDGYKWRKY  120
GQKSIKNSPN PRSYFKCTNS ICNAKKQVER SIDDPNTYII TYEGFHLHFT YPFFLSNSTH  180
RSNKKPKIHI DAQYRAHFEI NPKSQTQEKN KQTKLVKPDY QNCMPYAADG STPANLEDGF  240
FPPLIQGQQQ QGLLEDVVAP AIKNIPTNDG VLAASRSSLP SYTSSTCSFS RTDSPPLYPS  300
FFKLDSQFLN IGFSGEIVQS DLVNFKHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-181121681874Probable WRKY transcription factor 4
2lex_A4e-181121681874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076922001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659376.20.0probable WRKY transcription factor 49
SwissprotQ9FHR71e-116WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLA0A078I1E00.0A0A078I1E0_BRANA; BnaC09g17450D protein
STRINGBra027480.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-112WRKY DNA-binding protein 49
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]