PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076663001
Common NameGSBRNA2T00076663001, LOC106429997
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 469aa    MW: 52188.7 Da    PI: 5.8455
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076663001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.69.6e-15741135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  GSBRNA2T00076663001  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                         99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.8E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-11546No hitNo description
CDDcd002023.50E-16654No hitNo description
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003201.7E-12741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF139194.8E-9235326IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RSEGDNEIED  60
HRVQKTMMIN GMPVNKKILK RKSSHQENFN NGFKKRSLEE EASNRSSSGS VVSNSESCDQ  120
SNAWETIFPC KKRTCVVVGR PKAASSVEKL TKDLFSILQE QQQSSCLSGC SEEDLLFENG  180
SPMVIGHGSV LMRDEESEAS SLLVESSKSV SVRSVGFEVN RVQRSLNFGG NDIKHEQHKS  240
KPQVLGRPSL PLCNIDLKDV FNFDEFMEKF TEEEQQKLLK LLPGVDSVDL PDSLRSMFEC  300
SQFKDNFSLF QQLVADGVFE TLSSSSSSKP EEFKRLAKLA LSDPNKSHLL ESYYMLKEHR  360
KVIEDSVTTA SKVSNSNPSS ERPCESLNQN FSETRVVMKS PKEVMKSRSK HIGTEEIVEN  420
SISSLNQMSY GGPMAFSSED NDICDEEDVL VDVPSNGSFP QAELLHMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076663001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834930.0AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013726225.10.0GATA transcription factor 27
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLA0A078HY410.0A0A078HY41_BRANA; BnaAnng07120D protein
STRINGBo9g069320.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]