PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076582001
Common NameGSBRNA2T00076582001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 292aa    MW: 33079.4 Da    PI: 8.805
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076582001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.7e-1977163289
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f +l+++++l+++ l+lp + ++++g+  ++  +++l d   rsW++ l+++k+s+++ +++GW++F+++ng + g f++Fkl+g+ e
  GSBRNA2T00076582001  77 FVALVTASSLRTDKLYLPQHVTSSNGLTRKC-CKIVLVDGGERSWTLDLSFNKSSDTFCMSRGWRNFCEENGQEPGGFFMFKLVGNGE 163
                          5679999******************998655.6**************************************************99743 PP
2B346.47e-151662421799
                          E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          +lp  f++e+g++k++  ++ l  ++g +W   l   + +g++ l+kGWkeF kang+++g ++ F+  + +++++v++++++
  GSBRNA2T00076582001 166 SLPALFVRENGINKPG--EVHLLGKDGTKWPTSLL-VNIRGSMSLGKGWKEFIKANGVESGFTIKFM--W-EDTTPVFSLCSA 242
                          7999*******99766..8***************5.55666789***********************..6.788899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-1872163IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-1972165IPR015300DNA-binding pseudobarrel domain
CDDcd100179.57E-1776165No hitNo description
PROSITE profilePS5086313.11276175IPR003340B3 DNA binding domain
SMARTSM010199.4E-2177166IPR003340B3 DNA binding domain
PfamPF023621.1E-1777163IPR003340B3 DNA binding domain
CDDcd100171.29E-11159237No hitNo description
Gene3DG3DSA:2.40.330.101.8E-13164244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-13166234IPR015300DNA-binding pseudobarrel domain
PfamPF023625.2E-13166242IPR003340B3 DNA binding domain
SMARTSM010194.7E-10167243IPR003340B3 DNA binding domain
PROSITE profilePS508639.77182243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAKPRLLRPQ FFHALVPGFH THLVNHLSYS LALSRTASLF TVHSYFRLAS QKQESEDEKS  60
RSRSRTTFFF FSDNSCFVAL VTASSLRTDK LYLPQHVTSS NGLTRKCCKI VLVDGGERSW  120
TLDLSFNKSS DTFCMSRGWR NFCEENGQEP GGFFMFKLVG NGETPSLPAL FVRENGINKP  180
GEVHLLGKDG TKWPTSLLVN IRGSMSLGKG WKEFIKANGV ESGFTIKFMW EDTTPVFSLC  240
SADSTSEREQ EEYFKGIKKQ SLFIDPSNID NSSKDENNKE ENMSWEGQKR GR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076582001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433753.11e-81PREDICTED: B3 domain-containing protein REM13-like
SwissprotP0CAP54e-46REM13_ARATH; B3 domain-containing protein REM13
TrEMBLA0A078JMD00.0A0A078JMD0_BRANA; BnaAnng27990D protein (Fragment)
STRINGBra007840.1-P6e-79(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24696.15e-48B3 family protein
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]