PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076493001
Common NameGSBRNA2T00076493001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 223aa    MW: 24503.5 Da    PI: 7.1675
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076493001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.36e-2082116135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C tt+TplWR+gp+g+k+LCnaCG++++k+++
  GSBRNA2T00076493001  82 CASCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 116
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.11276112IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-1876128IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-1279116No hitNo description
Gene3DG3DSA:3.30.50.101.8E-1680116IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS00344082107IPR000679Zinc finger, GATA-type
CDDcd002021.45E-1382113No hitNo description
PfamPF003201.3E-1782116IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGLSMFSSEN DVVHHHSSPY ASVDCTLSLG TPSTRLFNDD DDRRFSTHTS NNISNALGSW  60
DFLHGGKKAG GGGGNNLVAR HCASCDTTST PLWRNGPRGP KSLCNACGIR FKKEERRASA  120
AGNSTSGGGL TDFGIPASDH HGGADYYYNN NSNNNHYYAS SSPWTHHQQQ NTQRVPYYSP  180
ANNNEYSFVD DVRERHDITT DPFLSWRLNV ADRTRLVHDC TM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16472GGKKAGGGG
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout the inflorescence meristem (IM) and early stages of floral primordia. In developping flowers, restricted to the innert hree whorls, speci fi cally in the petals, stamens, and carpels. Within the stamens, mostly detected in the anther locules as well as in the vascular strands. In carpels, mainly present in ovules. {ECO:0000269|PubMed:23335616}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076493001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893730.0AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747372.11e-165GATA transcription factor 19-like
SwissprotQ6QPM26e-90GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A078JT751e-164A0A078JT75_BRANA; BnaC01g40720D protein
STRINGBra011695.1-P1e-134(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.14e-80GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]