PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00076300001 | ||||||||
Common Name | GSBRNA2T00076300001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 1068aa MW: 118366 Da PI: 9.9036 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100 | 1.4e-31 | 198 | 254 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK++kg e+prsYYrCt+ +Cpvkkkvers+ d+++++i+Y+g+H+he GSBRNA2T00076300001 198 DDGYNWRKYGQKPIKGCEYPRSYYRCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHE 254 8****************************************.***************8 PP | |||||||
2 | WRKY | 103.1 | 1.6e-32 | 342 | 400 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+ GSBRNA2T00076300001 342 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDVKAVITTYEGKHNHD 400 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.7E-28 | 189 | 256 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-25 | 195 | 256 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-35 | 197 | 255 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.076 | 198 | 256 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-24 | 198 | 253 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-35 | 327 | 402 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-28 | 334 | 402 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.711 | 337 | 402 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-37 | 342 | 401 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.9E-25 | 343 | 400 | IPR003657 | WRKY domain |
SuperFamily | SSF56112 | 9.98E-81 | 568 | 840 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:3.30.200.20 | 3.5E-25 | 570 | 660 | No hit | No description |
PROSITE profile | PS50011 | 37.531 | 573 | 834 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 1.2E-71 | 573 | 834 | IPR000719 | Protein kinase domain |
PROSITE pattern | PS00107 | 0 | 579 | 602 | IPR017441 | Protein kinase, ATP binding site |
Pfam | PF00069 | 7.6E-45 | 649 | 834 | IPR000719 | Protein kinase domain |
Gene3D | G3DSA:1.10.510.10 | 2.4E-52 | 661 | 836 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 669 | 681 | IPR008271 | Serine/threonine-protein kinase, active site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1068 aa Download sequence Send to blast |
MAVGDDVSSM RTTTLVAPTR PTITVPQRPP AIETAAYFLG GGDGLSLSPG PLSFVSSLFV 60 DSFPDLLTPD NQRTTSFSQL LAGAMSVSPG SGRSTAGMIA GGGPLFTIPS GFSPSSLLTS 120 PMFFPPQQSP TQTVFVQPQS QPKRPDSFPN QMPPSTSTTV HGRRSCKAPQ ADRYNNPAAN 180 NNNTNRSYNV VHVDKPADDG YNWRKYGQKP IKGCEYPRSY YRCTHVNCPV KKKVERSSDG 240 QITQIIYKGQ HDHERPQNRR GGGGELRGSG EIGDIHYIGG VGHMESSDDS GYANDHDNDN 300 DDDNEDIPAS KIRKIDGGVS TTHRSVTEPK IIVQTRSEVD LLDDGYRWRK YGQKVVKGNP 360 HPRSYYKCTT ANCTVRKHVE RASTDVKAVI TTYEGKHNHD VPAARNGTAP ATPATAGTSD 420 HHRLGIDLAA RDRPPCVGPV YPSRSILTPP GNFLTISSSI MGCFNSKHSS PPPRPIRRRS 480 DTAANRGHPQ NTHKPYVLPT PPSHRRVVNS SPKKHHNNDD DAPRSKTTGV SHRSGLPHGN 540 VEVEQVAAGW PSWLTSASPE AVHGLVPLRA EDFEKREKIG QGTYSNVFRA CEISTGRVMA 600 LKKIRVQNFD TENIRFIARE IMILRRLDHP NIMKLEGIIA SRNSNSMYFI KCYMQQLLLA 660 VEHCHLRGIM HRDIKAANIL VNNKGVLKLA DFGLANIVTP RNKNQLTSRV VTLWYRAPEL 720 LMGSTSYSVS VDLWSVGCVF AEILTGRPPL KGRTEIEQLH KIYKLCGSPD EELWRNNKLH 780 PQTKMFGQQH QYEGCLRETF EEFPKTAVNL LENLFSIDPE KRGTASSALM SEYFNTKPYA 840 CDPSTLPKYP PNKEMDAKYR EELQRRRRAT IKKRDNLVSK KTGKSRRTIK DPLSKLPTQQ 900 ETKKEAETEI TLQTPSETSQ ATTRSEFPYT ALSQATAPAS GFAWAGAKKR KENDAASTLT 960 YNQPAGSASH VSGMSMAFAK NTFGLTINED RPFLRPHVSL DSSGDILLYP NVHHKKEEDN 1020 MSQLNSDLRN VGANPKIFQT NGMNEILRRT ESDARVAVRR PPRIERG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5efq_A | 1e-56 | 579 | 877 | 19 | 345 | Cyclin-dependent kinase 13 |
5efq_C | 1e-56 | 579 | 877 | 19 | 345 | Cyclin-dependent kinase 13 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.303 | 1e-170 | bud| flower| microspore-derived embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00076300001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430065 | 0.0 | KF430065.1 Brassica rapa WRKY transcription factor 58 (WRKY58) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638723.1 | 0.0 | PREDICTED: uncharacterized protein LOC106343907 isoform X2 | ||||
TrEMBL | A0A078I0A5 | 0.0 | A0A078I0A5_BRANA; BnaC05g48590D protein | ||||
STRING | Bo5g156460.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13105 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01080.1 | 1e-142 | WRKY DNA-binding protein 58 |
Publications ? help Back to Top | |||
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