PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076195001
Common NameGSBRNA2T00076195001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 278aa    MW: 31584.3 Da    PI: 8.277
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076195001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.5e-33134191259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp +v++tYeg+H h+
  GSBRNA2T00076195001 134 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPLIVITTYEGKHYHP 191
                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-34118193IPR003657WRKY domain
SuperFamilySSF1182904.97E-29125193IPR003657WRKY domain
PROSITE profilePS5081131.95128193IPR003657WRKY domain
SMARTSM007747.8E-38133192IPR003657WRKY domain
PfamPF031063.4E-25134191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDDQVDHKNT CLDEVIFTSV ADCLQSSLEK AFKFSLYNYP CQPISPSNMG QIVNYRYLNL  60
NPNSPIVSSS SNEADPKENV GDKSGPMEDH NEGDQHGVGE TSKQLRKQGK GKGEKKEREA  120
RVAFMTKSEV DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT TQKCNVKKRV ERSFQDPLIV  180
ITTYEGKHYH PIPSTLRGPM VGENLLGHHG SAILHSFPRY HQEFLMKNQH PVNYQSAGTV  240
TYQRCHGDST NYSNHQQVID CGLLQDIVPS KFLKHES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-28123194778Probable WRKY transcription factor 4
2lex_A2e-28123194778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076195001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300770.0KF430077.1 Brassica rapa WRKY transcription factor 71 (WRKY71) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288945.10.0probable WRKY transcription factor 71
RefseqXP_022545242.10.0probable WRKY transcription factor 71
RefseqXP_022559625.10.0probable WRKY transcription factor 71
SwissprotQ93WV41e-118WRK71_ARATH; WRKY transcription factor 71
TrEMBLA0A078I0V30.0A0A078I0V3_BRANA; BnaA07g07600D protein
TrEMBLA0A3P6B4750.0A0A3P6B475_BRACM; Uncharacterized protein
STRINGBra030178.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139111825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-113WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Yu Y, et al.
    WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana.
    Plant J., 2016. 85(1): p. 96-106
    [PMID:26643131]
  4. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  5. Yu Y, et al.
    WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(2): p. 414-422
    [PMID:29272465]