PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00076133001 | ||||||||
Common Name | GSBRNA2T00076133001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 307aa MW: 34664.6 Da PI: 8.9452 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.9 | 4.3e-35 | 18 | 110 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y++++d+ ++e++sws+ ++sfvv++ efa+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k GSBRNA2T00076133001 18 FLSKTYDMVDDPLTDEVVSWSSGNKSFVVWNVPEFARLFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFIRGQK 98 9****************************************************************999.........************* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 +ll++i r+k + GSBRNA2T00076133001 99 QLLKSIVRRKPS 110 ********9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.4E-37 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.0E-57 | 14 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.86E-34 | 14 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 8.4E-20 | 18 | 41 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.0E-30 | 18 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.4E-20 | 56 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 57 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.4E-20 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGSNSESVST VVSSIPPFLS KTYDMVDDPL TDEVVSWSSG NKSFVVWNVP EFARLFLPKY 60 FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFIRGQKQL LKSIVRRKPS QVQPPQQPQV 120 QHSSVGACVE VGKFGLEEEV ERLQRDKNVL TQELVRLRQQ QQVTEHHLQN VGQKVHVMEQ 180 RQQQMMSFLA KAVQSPGFLN QFSQQNNEGN NQHVSEGNKK RRLPVEDQKY SGGYGANGLS 240 RQIVRYQSSM NEAADTMLEQ IHNMSNPQSR QEPLSNNHGS FLLGDVPNIS DNGSSTNGGQ 300 FAVFSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-25 | 13 | 110 | 15 | 123 | Heat shock factor protein 1 |
5d5u_B | 2e-25 | 13 | 107 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-25 | 13 | 107 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-25 | 13 | 107 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00076133001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013732338.2 | 0.0 | LOW QUALITY PROTEIN: heat stress transcription factor A-1e-like | ||||
Swissprot | Q9SCW5 | 1e-170 | HFA1E_ARATH; Heat stress transcription factor A-1e | ||||
TrEMBL | A0A078I234 | 0.0 | A0A078I234_BRANA; BnaA05g32280D protein | ||||
TrEMBL | A0A3P6DDI8 | 0.0 | A0A3P6DDI8_BRACM; Uncharacterized protein | ||||
STRING | Bra032023.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02990.1 | 1e-149 | heat shock transcription factor A1E |
Publications ? help Back to Top | |||
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