PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075893001
Common NameGSBRNA2T00075893001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 164aa    MW: 19259 Da    PI: 8.6218
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075893001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84.2e-18277184
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
                         f+kvlt+sd +k++rlv+pk++ae++            led ++g + +++ +  k s++yv+tkGW +Fvk+ +L++gD+v F++
  GSBRNA2T00075893001  2 FDKVLTQSDFGKLNRLVIPKQHAENYfP----------LEDnQTGTVLDFEDRTGKISQSYVMTKGWCRFVKEMKLESGDIVSFHR 77
                         89*********************99952..........3332667777777777889999************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.2E-18177IPR015300DNA-binding pseudobarrel domain
CDDcd100176.60E-16177No hitNo description
Gene3DG3DSA:2.40.330.102.0E-21184IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-7292IPR003340B3 DNA binding domain
PfamPF023629.5E-16277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MFDKVLTQSD FGKLNRLVIP KQHAENYFPL EDNQTGTVLD FEDRTGKISQ SYVMTKGWCR  60
FVKEMKLESG DIVSFHRGYV PDDNEPEKRK NIFFIDWRPR ANTSLVHNIN YHHYPLLGSI  120
IVPALEYELK NYKYSLYINL SKFKHTIFSQ THMFCNTHAS PYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-3311007113B3 domain-containing transcription factor NGA1
5os9_B4e-3311007113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075893001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475147.19e-66PREDICTED: B3 domain-containing transcription factor NGA4-like
RefseqXP_018475148.19e-66PREDICTED: B3 domain-containing transcription factor NGA4-like
SwissprotO825953e-57NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLA0A3P5ZVU81e-120A0A3P5ZVU8_BRACM; Uncharacterized protein (Fragment)
STRINGBo3g022340.13e-81(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-59B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]