PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00075735001

Common Name

GSBRNA2T00075735001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 311aa MW: 34485.6 Da PI: 9.066

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00075735001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.4	2.5e-20	33	122	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W ++e+ aL++a+++++ +lrrg+l++++W++v++++ +g +s++qC++k+e+l+kry+ +k+++ +r + ss++ +f l+ GSBRNA2T00075735001 33 CWNDEETAALVNAYKDKWFALRRGNLRAADWDDVAAAVsslhTLGGPAKSAIQCRHKIEKLRKRYRGEKQRSLNRPGKFSSSWDLFPILD 122 7***********************************888777889************************9999*****9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.9E-21	32	124	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MSTPDGSPVA MAVDPSTAVT VASTTTRRVP PPCWNDEETA ALVNAYKDKW FALRRGNLRA 60 ADWDDVAAAV SSLHTLGGPA KSAIQCRHKI EKLRKRYRGE KQRSLNRPGK FSSSWDLFPI 120 LDAMELKGSH GKPSSGEFGG GFPLKSFGDR SFASHGFKAK NFSKPEANFS PEMDYDDEFD 180 EGFNPRIQHS RSSSRANGYG RKDGSYPRSN NTGVSNGYGS SSRFKHEQMN AADVESDPID 240 EVVSSVKMLT EMFVRVENSK MEMMREMEKT RMEMELKHCQ MMLESQQQII GAFAEALSEK 300 KSTNARRPGS *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.7304	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00075735001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232568	0.0	AC232568.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH122A22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009145223.1	1e-131	PREDICTED: uncharacterized protein LOC103868920
Refseq	XP_013721585.2	1e-131	uncharacterized protein LOC106425450 isoform X1
Refseq	XP_013721640.2	1e-131	uncharacterized protein LOC106425450 isoform X2
Refseq	XP_013733824.1	1e-131	uncharacterized protein LOC106437476
Swissprot	O23550	3e-95	FRIP2_ARATH; Protein FIP2
TrEMBL	A0A078I1K5	0.0	A0A078I1K5_BRANA; BnaA01g17960D protein
STRING	Bra040110.1-P	1e-130	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-30	Trihelix family protein

Publications ? help Back to Top
Sakai T, et al. The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots. Plant J., 2012. 70(2): p. 303-14 [PMID:22122664] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]