PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00075571001 | ||||||||
Common Name | GSBRNA2T00075571001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 250aa MW: 27604.4 Da PI: 4.7665 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 3 | 18 | 6 | 21 |
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 C+ksFs+ s+L+ H++ GSBRNA2T00075571001 3 CNKSFSNGSTLREHMM 18 ***************7 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0016 | 174 | 196 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk+F + L H +H GSBRNA2T00075571001 174 FICDVCGKVFGSYQALGGHRTSH 196 89********9999998888777 PP | |||||||
3 | zf-C2H2 | 14.9 | 7.8e-05 | 225 | 247 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F + L H++tH GSBRNA2T00075571001 225 HQCGVCGREFESGQALGGHMKTH 247 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.48E-8 | 172 | 247 | No hit | No description |
Pfam | PF13912 | 6.1E-12 | 174 | 197 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.044 | 174 | 196 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.408 | 174 | 201 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 176 | 196 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-10 | 224 | 248 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.021 | 225 | 247 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.138 | 225 | 249 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 227 | 247 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSCNKSFSNG STLREHMMSE SASGSTLPSL ETSNNETVLI GGPDLKREDG AHQIKGERKM 60 IVDEADSTGS GSPLTAVEEA GLILVALSKG QRPENSQNWN AIDRLLATPN GKEEYYETDL 120 DSDDDNKEVK YKSVAELLTQ NVETLTEDNG EDDEDNDADE TNLVTREKKC KKEFICDVCG 180 KVFGSYQALG GHRTSHKCKR LKICDKNDQD RELVPNKKND QDRRHQCGVC GREFESGQAL 240 GGHMKTHYI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00075571001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232542 | 0.0 | AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013649110.1 | 1e-172 | zinc finger protein ZAT1-like | ||||
Refseq | XP_013674494.1 | 1e-172 | zinc finger protein ZAT1-like | ||||
TrEMBL | A0A078I1A7 | 0.0 | A0A078I1A7_BRANA; BnaAnng06980D protein | ||||
STRING | Bra029315.1-P | 1e-172 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14171 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61470.1 | 5e-31 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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