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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00075525001 | ||||||||
Common Name | GSBRNA2T00075525001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 287aa MW: 30966.7 Da PI: 7.4978 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.5 | 2.9e-38 | 42 | 99 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++lkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s GSBRNA2T00075525001 42 HHLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRS 99 5789***************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-32 | 33 | 98 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.1E-33 | 42 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.534 | 44 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 46 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MQNIHDYSMT GGGGGGSTGR FYGGGGGGDR RMRAHQNNIL NHHLKCPRCN SLNTKFCYYN 60 NYNLSQPRHF CKNCRRYWTK GGVLRNVPVG GGCRKAKRSK PKQDQPPSSA DKPTTQDVEE 120 KSSSSESSSL TASNSTTTAA AVKVASSGFM GTDMPNNIKQ YGNGVVWSTL FGQGSSDGGV 180 FSETNGFAAA STIETTPFEY GGSSVNQQCI GDHLKFEGNT IRQQFGDRTA QVDPNMGFEP 240 LDWGSGGGDD QTLFDLTSTV DHSYWSQSQW TSSSDHQDDQ NGLYLP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00075525001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353138 | 1e-114 | AK353138.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-G03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022561922.1 | 0.0 | dof zinc finger protein DOF5.4-like | ||||
Swissprot | Q8LDR0 | 1e-121 | DOF54_ARATH; Dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A078HYU8 | 0.0 | A0A078HYU8_BRANA; BnaAnng06610D protein | ||||
STRING | Bra029352.1-P | 1e-170 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4482 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 1e-104 | OBF binding protein 4 |
Publications ? help Back to Top | |||
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