PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075455001
Common NameGSBRNA2T00075455001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 189aa    MW: 20726.5 Da    PI: 6.499
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075455001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.51.1e-38151151100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++Cv+apyf aeq +++fa+vhk+FGasn +k+l +lp ++r+da+s+l+yeA ar++dPvyG+vg++++lq+q+++
  GSBRNA2T00075455001  15 PCGACKFLRRKCVSGCVFAPYFDAEQgTATFAAVHKVFGASNASKMLLRLPLNKRHDAVSTLCYEALARLSDPVYGSVGHLFSLQHQVMN 104
                          7***********************9988************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+ae+a+++++
  GSBRNA2T00075455001 105 LQAEIAHVQAR 115
                          ******99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.90414116IPR004883Lateral organ boundaries, LOB
PfamPF031957.8E-3815113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MTGNLNGGGR GGEGPCGACK FLRRKCVSGC VFAPYFDAEQ GTATFAAVHK VFGASNASKM  60
LLRLPLNKRH DAVSTLCYEA LARLSDPVYG SVGHLFSLQH QVMNLQAEIA HVQARLSTFQ  120
RFSVIPPQQM QQPPHNNEYP VEQTNLDFAW EEEQLSLAGN EDGEFQELAM QFVSKYLPEV  180
KLPACTFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-35111137110LOB family transfactor Ramosa2.1
5ly0_B4e-35111137110LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269|PubMed:12068116}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075455001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894981e-155AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632435.11e-138PREDICTED: LOB domain-containing protein 19-like
SwissprotO221321e-93LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A078JSE01e-138A0A078JSE0_BRANA; BnaCnng59550D protein
TrEMBLA0A3P6C5Y01e-138A0A3P6C5Y0_BRAOL; Uncharacterized protein
STRINGBo4g024610.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.16e-92LOB domain-containing protein 19
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]