PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075251001
Common NameGSBRNA2T00075251001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 295aa    MW: 33754.2 Da    PI: 8.0175
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075251001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.97.2e-26166214351
              G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                          r+rW+++LH+rFv+a++ +GGs++AtPk+i+++mkv+gLt++++kSHLQ
  GSBRNA2T00075251001 166 RRRWSEDLHRRFVDALQMIGGSQVATPKQIKDIMKVDGLTNDEIKSHLQ 214
                          99*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.816161221IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-21162229IPR009057Homeodomain-like
SuperFamilySSF466891.08E-11162215IPR009057Homeodomain-like
TIGRFAMsTIGR015577.9E-22166214IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSLDLNLYSL AKPLSQFLND VSKIRDNHSK LFEIDEYVGK LEEERKKIDV FKRELPICML  60
LMNEAIERLK EEASSVKLEI DNKKNWMNSA QLWISNTNSQ LPSTNGEEDR CVTQTCSNNN  120
NSNQGGAILS FNVPPRPPPL SLRTPILTDY SSRIEQSHPI QKKELRRRWS EDLHRRFVDA  180
LQMIGGSQVA TPKQIKDIMK VDGLTNDEIK SHLQCEMINL LQKYRMHIHK HPAKILTASD  240
QHGLSRSDSP QGPLVDRGLF SNNGHSSEEE EKSDGRSWKS ESRRKRQGLL DLEL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, inflorescence apex, floral primordia, stamen primordia, carpel primordia and ovules. {ECO:0000269|PubMed:26903506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075251001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022572838.10.0transcription factor HHO5-like
SwissprotF4JRB01e-103HHO5_ARATH; Transcription factor HHO5
TrEMBLA0A3P6A3U30.0A0A3P6A3U3_BRACM; Uncharacterized protein
STRINGBra017795.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-105G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]