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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00074919001 |
Common Name | GSBRNA2T00074919001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
MIKC_MADS |
Protein Properties |
Length: 379aa MW: 43271.7 Da PI: 8.9581 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00074919001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 93 | 1.4e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk nrqvtfskR+ g+lKKA+ELSvLCd+eva+iifss+ klye+ss
GSBRNA2T00074919001 9 KRIENKVNRQVTFSKRKGGLLKKAYELSVLCDVEVALIIFSSSSKLYEFSS 59
79***********************************************96 PP
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2 | K-box | 76.2 | 8.8e-26 | 79 | 167 | 7 | 94 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek.elqeenkaL 94
++ e+ +++++qe++kL++++e+L r++R llGedL+++s+keL+ Le+qLe +l+ R++K+++ +eq+e+l++k +l ++nk++
GSBRNA2T00074919001 79 NNRPEESTQRWSQEVTKLRSKYESLLRTHRYLLGEDLGEMSVKELETLERQLEGALSATRQRKTQVTMEQMEDLRRKASlQLGDINKKM 167
45678889*******************************************************************99752556666655 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 31.595 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.40E-39 | 2 | 78 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.11E-31 | 3 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.7E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-23 | 83 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.994 | 86 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF05648 | 6.0E-24 | 233 | 368 | IPR008733 | Peroxisomal biogenesis factor 11 |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0016559 | Biological Process | peroxisome fission |
GO:0005634 | Cellular Component | nucleus |
GO:0005779 | Cellular Component | integral component of peroxisomal membrane |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MARGRVEVKR IENKVNRQVT FSKRKGGLLK KAYELSVLCD VEVALIIFSS SSKLYEFSSD 60 AMEKTIERYS RCNNNILDNN RPEESTQRWS QEVTKLRSKY ESLLRTHRYL LGEDLGEMSV 120 KELETLERQL EGALSATRQR KTQVTMEQME DLRRKASLQL GDINKKMKLE VEGHEFKGFQ 180 DLLLNSDARA GSTDFSLFSS HHNSVDCDVG QFLKNGFQQQ YEQGDGLVLE SNSKNALLCT 240 YYFLDQFVWL GRSGIYKNKV LTELIRSFAI FCWLGSSLCN IAIQIGELIM HSSTMKKMEK 300 ELKDDEEQDK ETDRAKLQKT KDRILVLIKS SMDTVVAIGL LHLAPFIVTP RVTGAFGFVT 360 SLISCYQLLP GRRKLKTP*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |