PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074713001
Common NameGSBRNA2T00074713001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 310aa    MW: 35736.2 Da    PI: 5.665
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074713001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1782.6e-5561331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv +yL +kv+g+++el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgk
  GSBRNA2T00074713001   6 LPPGFRFHPTDEELVAYYLDRKVNGRTIEL-EIIPEVDLYKCEPWDLPeKsFLPGNDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGK 94 
                          79****************************.99**************95334455788******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+ v s k+ ++g+kktLv+y+grap+g +t+Wvmheyrl
  GSBRNA2T00074713001  95 DRVVES-KKMKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL 133
                          **9999.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-633154IPR003441NAC domain
PROSITE profilePS5100559.7836154IPR003441NAC domain
PfamPF023654.9E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKVNG RTIELEIIPE VDLYKCEPWD LPEKSFLPGN  60
DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRVVES KKMKMGMKKT LVYYRGRAPH  120
GLRTNWVMHE YRLTHPTSSS SIQESYALCR VFKKNIQIPK RKEEEMTTSV GKEEEEEEKK  180
KWKKYDGETM ERESEEVESL KIASAETSSS ELTQGILLDE ANSSSIFALH FSSSLLDDHD  240
HQLFENYPQL PFHSPLPLQG FPQLSMNEAE IISMDNSKQQ DFHYRDSING TLDEIFSFAS  300
SSATLPPAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-57115512166NO APICAL MERISTEM PROTEIN
1ut4_B1e-57115512166NO APICAL MERISTEM PROTEIN
1ut7_A1e-57115512166NO APICAL MERISTEM PROTEIN
1ut7_B1e-57115512166NO APICAL MERISTEM PROTEIN
3swm_A1e-57115515169NAC domain-containing protein 19
3swm_B1e-57115515169NAC domain-containing protein 19
3swm_C1e-57115515169NAC domain-containing protein 19
3swm_D1e-57115515169NAC domain-containing protein 19
3swp_A1e-57115515169NAC domain-containing protein 19
3swp_B1e-57115515169NAC domain-containing protein 19
3swp_C1e-57115515169NAC domain-containing protein 19
3swp_D1e-57115515169NAC domain-containing protein 19
4dul_A1e-57115512166NAC domain-containing protein 19
4dul_B1e-57115512166NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074713001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1762781e-165AK176278.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-20-J17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106794.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotQ9FFI51e-81NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A078I0390.0A0A078I039_BRANA; BnaA08g00010D protein
TrEMBLA0A397YET60.0A0A397YET6_BRACM; Uncharacterized protein
STRINGBra030807.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81232640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-151NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]