![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00074499001 | ||||||||
Common Name | GSBRNA2T00074499001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 550aa MW: 59585.3 Da PI: 7.2042 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46 | 1.3e-14 | 195 | 254 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g GSBRNA2T00074499001 195 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 254 57*******************666664477446**********99*************98 PP | |||||||
2 | AP2 | 46.3 | 1.1e-14 | 299 | 348 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g GSBRNA2T00074499001 299 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 348 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.30E-22 | 195 | 264 | No hit | No description |
SuperFamily | SSF54171 | 5.56E-17 | 195 | 264 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.8E-12 | 195 | 254 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.927 | 196 | 262 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-15 | 196 | 263 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-28 | 196 | 268 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 197 | 208 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 297 | 358 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.20E-25 | 297 | 358 | No hit | No description |
PROSITE profile | PS51032 | 19.203 | 298 | 356 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-18 | 298 | 356 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-33 | 298 | 362 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 299 | 348 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 338 | 358 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 550 aa Download sequence Send to blast |
MKNNNNKSSS SYDSSLSPSS SSSSHQNWLS FSLSNNNNFN SSSNPNLATS TSDHPHPSHL 60 SLFQAFSPTP VHRQDESPGA SSGDATAVLS MYPGGPKLEN FLGGGASTTT GQMQQGQSLG 120 DVVFSSNVEQ PRHPPSAAEI YDYELKSIAA SFLGNYSGGH SSEVSSGQKQ QNSPTATEVS 180 PTPKKNVESF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQSRKGRQV YLGGYDKEDK 240 AARAYDLAAL KYWGPTTTTN FPISNYELEL EEMKHMTRQE FVASLRRKSS GFSRGASMYR 300 GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDISRY 360 DVKSIASCNL PVGGLNSKPS PVTPALDKQV DISPSDPPSL TTPSLTFNVA TPVHDHEGTF 420 FHIGIPIKQD PAAHYWSNVF GFPPNLKTET RPVATFGSDL HNFSSGFPIM PVMQDEGNNF 480 GGGFVESEGY NNHSAASSPV SAIPLPSAVD DGNAGYGGNI NWISNNTPNS YQTAKSNLSV 540 LQTPVFGLE* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.18002 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00074499001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB519821 | 0.0 | AB519821.1 Brassica napus BnEMK mRNA for AP2 domain transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616066.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X1 | ||||
Swissprot | Q6PQQ3 | 0.0 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A078HZQ8 | 0.0 | A0A078HZQ8_BRANA; BnaC02g11520D protein | ||||
STRING | Bo2g032400.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11583 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57390.1 | 0.0 | AINTEGUMENTA-like 5 |