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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00073811001 | ||||||||
Common Name | GSBRNA2T00073811001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 26968.9 Da PI: 4.8423 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.7 | 4.4e-13 | 178 | 223 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++Le+AveY+k Lq GSBRNA2T00073811001 178 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKALQ 223 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.837 | 172 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.46E-16 | 175 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.13E-11 | 176 | 227 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.1E-16 | 177 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-10 | 178 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-12 | 178 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MQSSHGDGGE GGSGEGNRGG LSRIRSAPAT WIETLLVDDE EDDLKPNLCL TELLTGNSAR 60 DSFEFPSSAE QGLYQGGGFH RQNSTPADFL SGSGAGTDGY FSNFGIPANY DYLPPNVDIS 120 PASKRSREIE AQFSSQMKEE QMSGGVSGMM DINMDKLLED SVPCRVRAKR GCATHPRSIA 180 ERVRRTRISD RIRRLQELVP NMDKQTNTAD MLEEAVEYVK ALQSKIQELT EQQRRCICKP 240 KEEQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.8796 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00073811001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF411791 | 1e-173 | AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds. | |||
GenBank | AY093794 | 1e-173 | AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013714967.1 | 0.0 | transcription factor bHLH80-like | ||||
Swissprot | Q9C8P8 | 1e-137 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A078HTG5 | 0.0 | A0A078HTG5_BRANA; BnaA08g06290D protein | ||||
TrEMBL | A0A3P6C4B6 | 0.0 | A0A3P6C4B6_BRACM; Uncharacterized protein | ||||
STRING | Bo8g026850.1 | 1e-162 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5104 | 25 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 1e-125 | bHLH family protein |
Publications ? help Back to Top | |||
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