PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073390001
Common NameGSBRNA2T00073390001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 301aa    MW: 34345.1 Da    PI: 8.4323
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073390001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.32.7e-3185139459
          ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                           +YkeClkNhAas+Ggha+DGCgEfmps geeg+++al+C+AC CHRnFHRre e 
  GSBRNA2T00073390001  85 NKYKECLKNHAASTGGHAIDGCGEFMPS-GEEGSIEALTCSACHCHRNFHRREIEG 139
                          58*************************9.999*********************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015667.5E-3186137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.8E-2986137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152328.05187136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-2190147IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.36E-19199272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-29205273IPR009057Homeodomain-like
TIGRFAMsTIGR015656.2E-27211267IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEVASQEEHD MPIPINTTHG GHGHMIHRHH DHHHHNPANS THPNPLIVLS NGNGFRQNHE  60
DPDHHNVGYN IMISNNNNKE KHVVNKYKEC LKNHAASTGG HAIDGCGEFM PSGEEGSIEA  120
LTCSACHCHR NFHRREIEGE DKTYFSPYHH NQPQRNPMFH HHHKMTRSPL PQQMIMPLGV  180
ATTTVSNSES EEDIPFQQPP PPYNHGGHNQ KKRLRTKFTQ EQKEKMLSFA ERIGWKMQRQ  240
EESVVQKFCQ EIGVRRRVLK VWIHNNKHNL SKKSNNNNVE ISASNNDINK ALTGNRASSS  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-232112691775ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073390001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618278.10.0PREDICTED: zinc-finger homeodomain protein 3 isoform X1
SwissprotO647221e-124ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A078HV360.0A0A078HV36_BRANA; BnaC02g34620D protein
STRINGBo2g136360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-95homeobox protein 21
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]