PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073196001
Common NameGSBRNA2T00073196001, LOC106412248
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 313aa    MW: 35953.8 Da    PI: 8.87
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073196001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.4e-12152202154
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +r++h  +Er+RR+++N  ++ Lr+l+P++   +  + + a+i+  A++++k L
  GSBRNA2T00073196001 152 QRMTHITVERNRRRQMNVYLSSLRSLIPSS---YILRGDQASIVGGAIDFVKLL 202
                          79****************************...9****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-15143212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-10150207No hitNo description
Gene3DG3DSA:4.10.280.105.2E-12150207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.303151202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-9152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-8157208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEEKIQGQNK LSSLDQKVIV RRSLQVQGSS EDQRFVLEED TMQQSEDLSS VLSFKDPNFL  60
RLLSLQTLQK PPWELGDYLP HEVPEFHSPT NYYHQNPSLE RINEAISSQE LQLNPQRKRR  120
NNNNLVAASV SREKRKRKRT KPTKNTEEME SQRMTHITVE RNRRRQMNVY LSSLRSLIPS  180
SYILRGDQAS IVGGAIDFVK LLEQQLQSLE AQKVTQQTDT KDISLEQSSK LRIDATVIES  240
HVNLKIQCQK KQGQLLRSII WLEKLRFTVL HLNVTSPCNA SASYSFNLKM EDDCTLTSAD  300
EITAAVRQIL DC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117138KRRNNNNLVAASVSREKRKRKR
2134141RKRKRTKP
3152163RMTHITVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.230940.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073196001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6784344e-70AB678434.1 Arabidopsis thaliana mRNA for basic helix-loop-helix DNA-binding superfamily protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013708610.10.0transcription factor bHLH70 isoform X2
SwissprotO810371e-140BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A078HV320.0A0A078HV32_BRANA; BnaC04g00610D protein
STRINGBo4g006950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-129bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]