PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00072565001
Common NameGSBRNA2T00072565001, LOC106414086
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 249aa    MW: 27645.4 Da    PI: 4.9332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00072565001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-1964113255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  GSBRNA2T00072565001  64 PYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 113
                          7*****888.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.47264121IPR001471AP2/ERF domain
SMARTSM003807.8E-3664127IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2165121IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.0E-3165122IPR001471AP2/ERF domain
PfamPF008477.7E-1365113IPR001471AP2/ERF domain
CDDcd000184.02E-3265123No hitNo description
PRINTSPR003671.2E-106576IPR001471AP2/ERF domain
PRINTSPR003671.2E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEKQINIESS VTHHQDNVTT STVAPMTSSS ESWSSSKRAL VQDNEAGGKR RKSNGRDGNE  60
NPTPYRGVRK RSWGKWVSEI REPKKKSRIW LGTYPTAEMA ARAHDVAALA IKGNSGYLNF  120
PELSGLLPRP VSCSPKDIQA AAAKAAETTW KEPVIHEKLV EELSHSELST ADQSSTSSSF  180
IFSSDTSETS STDKESNEET VFDLPDLFTE GLLNQNDAFR YYDSTSTWQL FGDDVVFRLE  240
EPFTWLDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1654121472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00414DAPTransfer from AT3G60490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00072565001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893190.0AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013710251.10.0ethylene-responsive transcription factor ERF035
SwissprotQ9M2101e-107ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBLA0A078HTH90.0A0A078HTH9_BRANA; BnaA09g38530D protein
STRINGBra007539.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.16e-98ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]