PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00072408001 | ||||||||
Common Name | GSBRNA2T00072408001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 268aa MW: 30920.3 Da PI: 6.8714 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.6 | 3.2e-21 | 51 | 109 | 3 | 56 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 +R+++t+eq+++Lee +++ +r+p++e+++++A+kl +++ ++V++WFqN++ +e+ GSBRNA2T00072408001 51 SRWNPTPEQITALEEIYRRgTRTPTTEQIQQIASKLskygRIEGKNVFYWFQNHKSRER 109 7*****************99*************************************98 PP | |||||||
2 | Wus_type_Homeobox | 112.9 | 1.7e-36 | 49 | 111 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 a++RW+PtpeQi+ Lee+y++G+rtP++e+iq+i+++L++yG+ie+kNVfyWFQN+k+Rer k GSBRNA2T00072408001 49 ASSRWNPTPEQITALEEIYRRGTRTPTTEQIQQIASKLSKYGRIEGKNVFYWFQNHKSRERLK 111 689**********************************************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.531 | 46 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.1E-6 | 48 | 115 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.85E-13 | 49 | 109 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-9 | 51 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.6E-19 | 51 | 109 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.94E-6 | 52 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048314 | Biological Process | embryo sac morphogenesis | ||||
GO:0048446 | Biological Process | petal morphogenesis | ||||
GO:0048482 | Biological Process | plant ovule morphogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0048353 | Cellular Component | primary endosperm nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MGYISNNNLI NYLAFSTTKP HLLSQCNIID NDHHQQLING SENNSAAAAS SRWNPTPEQI 60 TALEEIYRRG TRTPTTEQIQ QIASKLSKYG RIEGKNVFYW FQNHKSRERL KRRRCEGDND 120 INSVHEPLKD VKDSSSGGYR VDQTKIYASF PHTNQQPQNE LVLPNLINNE DHCQTEESER 180 ASDAGKEAMC GNLVASFVNQ EPGEINIEED GYNVRGEKTR EIRTLNLFPV LENQEKTDWF 240 AEKKKANANR MCYNYRYYYE FMPLKKN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In developing seeds, it is expressed in the embryo, suspensor and endosperm nuclei, but absent in the integuments. In seedlings, it is expressed in the shoot apical meristem and leaf primordia, but not in expanded cotyledons or mature leaves. In reproductive structures, transcripts could be detected in floral apical meristems, floral primordia, stamens and pistils. Also expressed in the tapetum in anthers and in the gynoecium. Weakly expressed in petals, sepals and the walls of carpels. {ECO:0000269|PubMed:15659481}. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in developing ovules. Present in developing primordia and differentiating organs but absent in mature organs. {ECO:0000269|PubMed:15659481}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a central role in ovule patterning by regulating cell proliferation of the maternal integuments and differentiation of the maegaspore mother cell (MCC). Involved in AGAMOUS (AG) repression in leaves. {ECO:0000269|PubMed:15659481}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00072408001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610840.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 6 | ||||
Swissprot | Q9ZVF5 | 3e-97 | WOX6_ARATH; WUSCHEL-related homeobox 6 | ||||
TrEMBL | A0A078HTT1 | 0.0 | A0A078HTT1_BRANA; BnaA09g18650D protein | ||||
STRING | Bra017448.1-P | 1e-173 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13369 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01500.1 | 6e-91 | WOX family protein |
Publications ? help Back to Top | |||
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