PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00072408001
Common NameGSBRNA2T00072408001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 268aa    MW: 30920.3 Da    PI: 6.8714
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00072408001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.63.2e-2151109356
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                          +R+++t+eq+++Lee +++ +r+p++e+++++A+kl    +++ ++V++WFqN++ +e+
  GSBRNA2T00072408001  51 SRWNPTPEQITALEEIYRRgTRTPTTEQIQQIASKLskygRIEGKNVFYWFQNHKSRER 109
                          7*****************99*************************************98 PP
2Wus_type_Homeobox112.91.7e-3649111264
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                          a++RW+PtpeQi+ Lee+y++G+rtP++e+iq+i+++L++yG+ie+kNVfyWFQN+k+Rer k
  GSBRNA2T00072408001  49 ASSRWNPTPEQITALEEIYRRGTRTPTTEQIQQIASKLSKYGRIEGKNVFYWFQNHKSRERLK 111
                          689**********************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.53146111IPR001356Homeobox domain
SMARTSM003899.1E-648115IPR001356Homeobox domain
SuperFamilySSF466893.85E-1349109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-951109IPR009057Homeodomain-like
PfamPF000468.6E-1951109IPR001356Homeobox domain
CDDcd000864.94E-652109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0016049Biological Processcell growth
GO:0048314Biological Processembryo sac morphogenesis
GO:0048446Biological Processpetal morphogenesis
GO:0048482Biological Processplant ovule morphogenesis
GO:0051301Biological Processcell division
GO:0048353Cellular Componentprimary endosperm nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGYISNNNLI NYLAFSTTKP HLLSQCNIID NDHHQQLING SENNSAAAAS SRWNPTPEQI  60
TALEEIYRRG TRTPTTEQIQ QIASKLSKYG RIEGKNVFYW FQNHKSRERL KRRRCEGDND  120
INSVHEPLKD VKDSSSGGYR VDQTKIYASF PHTNQQPQNE LVLPNLINNE DHCQTEESER  180
ASDAGKEAMC GNLVASFVNQ EPGEINIEED GYNVRGEKTR EIRTLNLFPV LENQEKTDWF  240
AEKKKANANR MCYNYRYYYE FMPLKKN*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In developing seeds, it is expressed in the embryo, suspensor and endosperm nuclei, but absent in the integuments. In seedlings, it is expressed in the shoot apical meristem and leaf primordia, but not in expanded cotyledons or mature leaves. In reproductive structures, transcripts could be detected in floral apical meristems, floral primordia, stamens and pistils. Also expressed in the tapetum in anthers and in the gynoecium. Weakly expressed in petals, sepals and the walls of carpels. {ECO:0000269|PubMed:15659481}.
UniprotTISSUE SPECIFICITY: Highly expressed in developing ovules. Present in developing primordia and differentiating organs but absent in mature organs. {ECO:0000269|PubMed:15659481}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role in ovule patterning by regulating cell proliferation of the maternal integuments and differentiation of the maegaspore mother cell (MCC). Involved in AGAMOUS (AG) repression in leaves. {ECO:0000269|PubMed:15659481}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00072408001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610840.10.0PREDICTED: WUSCHEL-related homeobox 6
SwissprotQ9ZVF53e-97WOX6_ARATH; WUSCHEL-related homeobox 6
TrEMBLA0A078HTT10.0A0A078HTT1_BRANA; BnaA09g18650D protein
STRINGBra017448.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133691828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.16e-91WOX family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]