PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00072097001
Common NameGSBRNA2T00072097001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 438aa    MW: 48873.9 Da    PI: 8.8254
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00072097001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.89e-27244297155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r++W+ eLH++Fv+a+++L G+ekA+Pk+ilelm+v++L++e+v+SHLQkYRl
  GSBRNA2T00072097001 244 KSRVVWSMELHQQFVKAINHL-GIEKAVPKRILELMNVPSLSRENVASHLQKYRL 297
                          68*******************.********************************8 PP
2Response_reg71.92.6e-24741821109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+ + + +l+++l +  y +v+ +++++ al+ll+e++  +Dl+l D+ mpgm+G++ll++   e  +lp+i+++  g  +++  
  GSBRNA2T00072097001  74 VLVVDDDASCLIILEKMLLRLMY-QVTICSQADVALTLLRERKgcFDLVLSDVHMPGMNGYKLLQQVGLEM-DLPVIMMSVDGRTATVMT 161
                          89*********************.*******************************************6644.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga d+l Kp+ peel +
  GSBRNA2T00072097001 162 GINQGACDYLIKPIRPEELKN 182
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-3971208No hitNo description
SuperFamilySSF521725.55E-3471199IPR011006CheY-like superfamily
SMARTSM004481.0E-2872184IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.21173188IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-2174182IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.00E-2775187No hitNo description
PROSITE profilePS512949.38241300IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-27241302IPR009057Homeodomain-like
SuperFamilySSF466891.27E-18242301IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-24244297IPR006447Myb domain, plants
PfamPF002496.3E-6246296IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MWIFTDAWYY YSYHESLSKA SLFKPVATYS SLYGFNHYIF LLTSLIIKPN LNNFLCEFKE  60
SMTISDQFPC GLRVLVVDDD ASCLIILEKM LLRLMYQVTI CSQADVALTL LRERKGCFDL  120
VLSDVHMPGM NGYKLLQQVG LEMDLPVIMM SVDGRTATVM TGINQGACDY LIKPIRPEEL  180
KNIWQHVVRR KCTINKNSIS SSSSLESLFS VSGVSEGSLK RRKNKRRVDS EEDDLLDPGN  240
SSKKSRVVWS MELHQQFVKA INHLGIEKAV PKRILELMNV PSLSRENVAS HLQKYRLYLK  300
RLSGAASQSR DAESMERYEN IQAMVSSGQI HPQALAALYG RPIDNHMSGG FGVWIPTDNH  360
FGGSNVSSAS NRCFGALDSP SSVAASMSVH GLSSSGNVRQ QADGFSNSTD YRIRQGNGSG  420
ISEESWILGR PLRQRKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22241303264ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in young leaf tissue. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00072097001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532221e-124AK353222.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616214.10.0PREDICTED: two-component response regulator ARR14 isoform X1
RefseqXP_013729247.10.0two-component response regulator ARR14 isoform X1
SwissprotQ8L9Y31e-178ARR14_ARATH; Two-component response regulator ARR14
TrEMBLA0A078JN840.0A0A078JN84_BRANA; Two-component response regulator
TrEMBLA0A0D3AVA60.0A0A0D3AVA6_BRAOL; Two-component response regulator
TrEMBLA0A3P6DEH70.0A0A3P6DEH7_BRAOL; Two-component response regulator
STRINGBo2g134560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-174response regulator 14
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]