PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00072011001
Common NameGSBRNA2T00072011001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 317aa    MW: 35520.7 Da    PI: 7.3882
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00072011001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.22.5e-24101201186
             trihelix   1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 
                          +Wt+ +v++Li a+ +++++ + g               +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +k+ ++++
  GSBRNA2T00072011001 101 KWTDTMVRLLIMAVYYIGDEGGVGDqteakkkisgggvlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGtACRV 190
                          7**************999999976556677889999999**********************************************559** PP

             trihelix  76 sstcpyfdqle 86 
                          +++ ++++ ++
  GSBRNA2T00072011001 191 VENQALLETMD 201
                          ******99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-2199228No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEPNGFSAFD PRMLTLETPQ NPPNPVQFQH PHPYSTAGDQ HPHHQQPLKS LYPRSSKAMQ  60
LSPLSVGDEE DRGSGSGSGC HPEDSVGTDG KRRVSQWHRM KWTDTMVRLL IMAVYYIGDE  120
GGVGDQTEAK KKISGGGVLQ KKGKWKSVSR AMVEKGFSVS PQQCEDKFND LNKRYKRVND  180
ILGKGTACRV VENQALLETM DHRLTPKLKD EVKKLLNSKH LFFKEMCAYH NSCGHLDQPQ  240
QPSQDPSQHR PEQQSCIHAA EVAEESETAE DSESEMEEEE TSKKRRRGEG VSGAVKRMRE  300
ETARALDEPG KSARRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.191110.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00072011001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013736020.10.0trihelix transcription factor GT-3a-like
TrEMBLA0A078JS050.0A0A078JS05_BRANA; BnaCnng58050D protein
STRINGBo3g061780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-122sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]