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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00071997001 |
Common Name | GSBRNA2T00071997001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
MIKC_MADS |
Protein Properties |
Length: 418aa MW: 47922.1 Da PI: 7.2362 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00071997001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 64.1 | 1.5e-20 | 89 | 129 | 5 | 45 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
+ rq t++kR+ngi+KKA+ELS+LCd++v +++fs+ gk
GSBRNA2T00071997001 89 SINARQATYCKRKNGIMKKAKELSILCDIDVVLLMFSPAGK 129
55679*********************************997 PP
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2 | K-box | 14.6 | 1.4e-06 | 221 | 253 | 47 | 79 |
K-box 47 slkeLqqLeqqLekslkkiRskKnellleqiee 79
s+ +LqqLe+ + +sl +iR +K+++l q ++
GSBRNA2T00071997001 221 SIDDLQQLENSIRQSLYQIRVHKENVLQHQQQQ 253
689************************998766 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MRRSIPQFPI FKLSIQTLIS DFGGHTCRLN RKPISSLSFT ILLPLLSFIF FLPHKETVFP 60 FSLGIRFFLF LFLLCRMGRV KLKIKKLDSI NARQATYCKR KNGIMKKAKE LSILCDIDVV 120 LLMFSPAGKP SLCTGEHSIG EVIAKFSQLA PQERAKRKLD NLEALKKTFM KLDHDVNISE 180 FLERSKPTVE VVSEQVKFLQ KHLSEIHTRL SYWTEVEKVD SIDDLQQLEN SIRQSLYQIR 240 VHKENVLQHQ QQQVMSIECK NELQSDIDLD FGIDIEQQLE NFSWVRTDEN MKAPLKEEED 300 PNLQFYHTYK DLTCSASSSL ESYSGLFGIK TPKLETGGIP GTSSDPNVQY SNLSFLNDPK 360 LQQLAEWNLL GSPADYYVSQ ILEASYRPQF GGNWPSSEMS NYPFTVFDDP LLSRPNL*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189353 | 0.0 | AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence. |