PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00071733001

Common Name

GSBRNA2T00071733001, LOC106382718

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 459aa MW: 51632.1 Da PI: 6.9654

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00071733001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.8	1.7e-17	234	283	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lr+l+P++ ++K +Ka+ L ++++YI+ Lq GSBRNA2T00071733001 234 RSKHSATEQRRRSKINDRFQTLRQLIPNS----DQKRDKASFLLEVIQYIHFLQ 283 889***********************9....9****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.9E-22	229	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-18	230	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.18	232	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.74E-15	234	286	No hit	No description
Pfam	PF00010	3.9E-15	234	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-13	238	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MEFPHSRVFE AQGRKKPTHD FLSACSNSNV HPADPMPSSQ GGYPKTHDFL QPFEQVGTRA 60 SAKEEGTRGS DDTTVASSEL KSPYVHNQHV LPGGIGTYTI SQMPYLNHNH LQRVPKPKVS 120 PMFTVSQASC NERNAVEDNS VSNCSSYAAK NGFTLWNESI EKRGHTRNRQ SQSFMDMIKS 180 AKGNSQEDDM DDDDEEFVTN KGSNTSTSQS QRVDLRVKVD KKGHGNEQKP NTPRSKHSAT 240 EQRRRSKIND RFQTLRQLIP NSDQKRDKAS FLLEVIQYIH FLQEKVDKHE PPEGTVPVLA 300 EAQAVDMEHQ HYLKRATDTT SFPVLGQRNS FFSPELSQLC PVSSSDVAAM ECENLREEEE 360 VEELSIHKGT ISISSVYSQG LLKTLSETLQ SSGVDLSRSR ISVQIKLSKQ PQEDEEVHLK 420 VRPHLQSGDE NHNDDENNNI KQSRTQKKLK KDHGIRNI*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MEFPHSRVFE AQGRKKPTHD FLSACSNSNV HPADPMPSSQ GGYPKTHDFL QPFEQVGTRA  60
SAKEEGTRGS DDTTVASSEL KSPYVHNQHV LPGGIGTYTI SQMPYLNHNH LQRVPKPKVS  120
PMFTVSQASC NERNAVEDNS VSNCSSYAAK NGFTLWNESI EKRGHTRNRQ SQSFMDMIKS  180
AKGNSQEDDM DDDDEEFVTN KGSNTSTSQS QRVDLRVKVD KKGHGNEQKP NTPRSKHSAT  240
EQRRRSKIND RFQTLRQLIP NSDQKRDKAS FLLEVIQYIH FLQEKVDKHE PPEGTVPVLA  300
EAQAVDMEHQ HYLKRATDTT SFPVLGQRNS FFSPELSQLC PVSSSDVAAM ECENLREEEE  360
VEELSIHKGT ISISSVYSQG LLKTLSETLQ SSGVDLSRSR ISVQIKLSKQ PQEDEEVHLK  420
VRPHLQSGDE NHNDDENNNI KQSRTQKKLK KDHGIRNI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.12199	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00071733001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149635	0.0	AC149635.1 Genomic sequence for broccoli [Brassica oleracea L. (Italica group)] BAC clone B19N3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022553005.1	0.0	transcription factor BIM1-like isoform X1
Swissprot	Q9LEZ3	1e-120	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A078HSU3	0.0	A0A078HSU3_BRANA; BnaC02g41800D protein
STRING	Bo2g161110.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18805	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-118	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106382718

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]