PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00071286001
Common NameGSBRNA2T00071286001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 282aa    MW: 31703.1 Da    PI: 4.4365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00071286001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71e-1813103199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv+   + ++s  + +p +f e+ + +   ++t +l+   g +W+v +  +k ++  ++t+GW++F+++++Lk+g+f++F +dg+++f
  GSBRNA2T00071286001  13 FFKVF--LSETASVSMAIPMSFNEHLEDP--LPQTAKLQGIGGGVWTVSF--KKIRDCAYFTSGWSKFAEDHELKDGEFLTFVYDGSHTF 96 
                          78888..777777789******9655655..889****************..99998899************************998888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                             v+vf +
  GSBRNA2T00071286001  97 --EVSVFGR 103
                          ..8888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-257106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.8E-239106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.66211104IPR003340B3 DNA binding domain
CDDcd100176.50E-2011101No hitNo description
PfamPF023624.7E-1613102IPR003340B3 DNA binding domain
SMARTSM010197.1E-2313104IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-9184263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-6184263IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.43187276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSESEEDVDL PRFFKVFLSE TASVSMAIPM SFNEHLEDPL PQTAKLQGIG GGVWTVSFKK  60
IRDCAYFTSG WSKFAEDHEL KDGEFLTFVY DGSHTFEVSV FGRSGCKEIR AEVETVELSD  120
ANSDKEEEED SSVVADSNEE EDEGDDDSSF IAGEDDEVSQ SLSHVDSDDT VSNAEGFSNL  180
EVESNPCFTT TLKNRIYELL IPANVVKEHG LTFCDRIKYI DGEGIMHGAK GKWSDDRICF  240
KGWDRICRRN RLKERDTVHC EMLHIRKKVH TIKITVTRGR G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-201210610104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00071286001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013750018.10.0B3 domain-containing protein REM20-like
RefseqXP_013750022.10.0B3 domain-containing protein REM20-like
RefseqXP_022560245.10.0B3 domain-containing protein REM20-like
RefseqXP_022560246.10.0B3 domain-containing protein REM20-like
SwissprotQ8LAV51e-99REM20_ARATH; B3 domain-containing protein REM20
TrEMBLA0A078FJC50.0A0A078FJC5_BRANA; BnaC06g14560D protein
STRINGBo6g067300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.14e-95B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]