PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00070846001 | ||||||||
Common Name | GSBRNA2T00070846001, LOC106432745 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 200aa MW: 21880.7 Da PI: 7.5316 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.1 | 2.9e-19 | 93 | 127 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C tt+TplWR+gp g+k+LCnaCG++++k+++ GSBRNA2T00070846001 93 CATCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 127 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.336 | 87 | 123 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.2E-18 | 87 | 139 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.95E-13 | 87 | 126 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-16 | 91 | 127 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.35E-12 | 92 | 124 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 93 | 118 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.2E-17 | 93 | 127 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MMGYQTNSNF SMFFSLENDD QNNQDYDSYN NPSSSTSVDC TLSLGTPSTR LDDHRRYSSA 60 SSNMTGDYFY HGGSAKTTSY KKGGGDHNLP RRCATCDTTS TPLWRNGPKG PKSLCNACGI 120 RFKKEERRAA ARNSITSGGG SSAAEIPAGG NYYNHHHYAS SSPSWAHPNT QRVQYFSPAP 180 EMEYPFVDDA TAASFLSWN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00070846001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596275.1 | 1e-148 | PREDICTED: GATA transcription factor 20-like | ||||
Refseq | XP_013729039.1 | 1e-148 | GATA transcription factor 20 | ||||
Swissprot | Q9ZPX0 | 1e-105 | GAT20_ARATH; GATA transcription factor 20 | ||||
TrEMBL | A0A078FFA3 | 1e-147 | A0A078FFA3_BRANA; BnaC07g03390D protein | ||||
TrEMBL | A0A0D3D319 | 1e-147 | A0A0D3D319_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DUE1 | 1e-147 | A0A3P6DUE1_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g010220.1 | 1e-147 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6159 | 17 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 2e-87 | GATA transcription factor 20 |
Link Out ? help Back to Top | |
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Entrez Gene | 106432745 |
Publications ? help Back to Top | |||
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