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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00070424001 | ||||||||
Common Name | GSBRNA2T00070424001, LOC106394956 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 24166.7 Da PI: 9.8555 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.5 | 1.2e-08 | 128 | 168 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L GSBRNA2T00070424001 128 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 168 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.434 | 119 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-14 | 120 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-15 | 123 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-14 | 125 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-6 | 129 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.50E-6 | 142 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDSDIMNMMM QQIEKLPEFC NTNPSLIDHN NNTNPFLLNS NHNHSDSMTP EPGLLTNPSS 60 LSPNTIYSSV LHEKRSTSSN TNSTNMEAMR EMIYRIAVMQ PIHIDPQAVK PPKRRNVRIS 120 KDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE AIHYVKFLKK QVQTLEQQAV 180 DTSGGGMTAA VSGGGGVIMK GCGAMGTHQM VGNAQILR* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}. | |||||
Uniprot | TISSUE SPECIFICITY: Flowers, especially in gynoecium. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17855426}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00070424001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596559.1 | 1e-162 | PREDICTED: transcription factor HEC1-like | ||||
Refseq | XP_013690953.1 | 1e-162 | transcription factor HEC1 | ||||
Swissprot | Q9FHA7 | 5e-89 | HEC1_ARATH; Transcription factor HEC1 | ||||
TrEMBL | A0A078FII6 | 1e-161 | A0A078FII6_BRANA; BnaC07g16340D protein | ||||
TrEMBL | A0A0D3D893 | 1e-161 | A0A0D3D893_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ECR9 | 1e-161 | A0A3P6ECR9_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g064100.1 | 1e-162 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1559 | 27 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 7e-74 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106394956 |