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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00070348001 | ||||||||
Common Name | GSBRNA2T00070348001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 161aa MW: 17757.8 Da PI: 6.9499 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.8 | 2.4e-07 | 14 | 50 | 3 | 39 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 i + +tf+kR g+ K + L+ L++a++av+ GSBRNA2T00070348001 14 ITKRESAATTFTKRSFGLHSKVSQLCLLTGAQIAVLA 50 66667789***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 10.218 | 4 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-4 | 4 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 8.62E-16 | 5 | 83 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-11 | 5 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-8 | 13 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MVKGTKRKAT MEKITKRESA ATTFTKRSFG LHSKVSQLCL LTGAQIAVLA TPPSANSNVS 60 FFSFGHSSVD SIVNAFLTGE RPAVREEIDD HEEDLGICLA RKELGLPQWL EDDSLLKSKN 120 PQELRRGRAS SEETEEEERR DNAENRTHGA TNPSSPVRFQ * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00070348001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013689865.1 | 1e-85 | agamous-like MADS-box protein AGL97 | ||||
TrEMBL | A0A078FIG8 | 1e-114 | A0A078FIG8_BRANA; BnaC04g28840D protein | ||||
STRING | Bo4g127100.1 | 4e-80 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38620.1 | 8e-49 | M-type_MADS family protein |
Publications ? help Back to Top | |||
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