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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00070150001 | ||||||||
Common Name | GSBRNA2T00070150001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CAMTA | ||||||||
Protein Properties | Length: 1035aa MW: 115306 Da PI: 5.3218 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 171.2 | 1.5e-53 | 33 | 148 | 2 | 116 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 ++e ++rwlk+ e++ iL+n+e+++l+++++++p+sgsl L+nr+++++frkDG++w++kkdg+++ E+he+LKvg+ve+l+cyY+h+e+ GSBRNA2T00070150001 33 YHEaQTRWLKPPEVHFILQNHERYQLAHTPPQNPPSGSLYLFNRRVLKFFRKDGHQWRRKKDGRAIAEAHERLKVGNVEALSCYYVHGEH 122 56779************************************************************************************* PP CG-1 91 nptfqrrcywlLeeelekivlvhyle 116 +ptfqrr+yw+L+ e+++ivlvhy++ GSBRNA2T00070150001 123 DPTFQRRIYWMLDPEYDHIVLVHYRD 148 ************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 74.578 | 29 | 155 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 9.0E-76 | 32 | 150 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 7.7E-47 | 35 | 148 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.5E-8 | 478 | 566 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 1.29E-16 | 479 | 562 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 1.7E-8 | 479 | 562 | IPR002909 | IPT domain |
CDD | cd00102 | 4.62E-6 | 479 | 564 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 3.5E-16 | 659 | 758 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.069 | 666 | 758 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.8E-16 | 667 | 761 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.02E-13 | 671 | 758 | No hit | No description |
Pfam | PF12796 | 9.8E-8 | 682 | 759 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 8.9E-4 | 699 | 728 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.06 | 699 | 731 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 14 | 812 | 834 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.61E-6 | 814 | 920 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.638 | 814 | 841 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.97 | 868 | 890 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.407 | 869 | 898 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.008 | 871 | 889 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 6.3E-4 | 891 | 913 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.267 | 892 | 916 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 6.7E-5 | 894 | 913 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1035 aa Download sequence Send to blast |
MSSTTILDIC SVSTGQVSYL IIMQSEYEIS NLYHEAQTRW LKPPEVHFIL QNHERYQLAH 60 TPPQNPPSGS LYLFNRRVLK FFRKDGHQWR RKKDGRAIAE AHERLKVGNV EALSCYYVHG 120 EHDPTFQRRI YWMLDPEYDH IVLVHYRDIS DGKEGRQTSG TVLQFSQNAS TLFSSPSSIG 180 TQNGSYNHYI GDSTDLLQQH SSTSPEVNSE VVFNSNGVET PQGSGSSYEF ENRQAIKRLE 240 EQLSLGDDIV STVDPLYAQN ESLDSLQFLA QPGTVYQRPE NNKLERCYGG YVGAQYNVDP 300 LYSQNESLDS LLSLDSAEDI NHLAQPATGH QRPENNRLER SYGGYIGADY HPNNLTLVKN 360 DSGGNGGSGD QESESWKDVL EACEASVAIN SEGSTPSSVK GLLPGMQEDS NWSYSNQADQ 420 GTLLLPQELG SFEHPACYPE LGAPENNAEY SRIMDDEGII RMPLQQEMRP TISHKQEFTI 480 QDVSPQWGYA NETTKVIIIG SFLCDPSEST WSCMFGSVEV PFEIIKEGVI RCEAPPCGPG 540 KVNLCITSRD GLSCSQIKEF VYRDKPDTSC STCSRDELFL LVRFVQTLLS DKKSNIEPGI 600 DKLKKIKADD DEEEWSHIID TILDDTATPS STVDWLLQKL LKDKLDAWLS SRSQDEDQTS 660 CSLSKQEQGI IHMVAGLGFE WALHPLLGLG VSVDFRDSNG WSALHWAARY GREKMVAALI 720 ASGASAGAVT DPNAQDPAGK TAASIAASNG HKGLAGYLSE VALTNHLSSL TLEETEHSLG 780 SAQMQAEMIV NSISGRSPPG NDDPHSRAAL RNVAQAAARI QAAFRAHSFR KRQEREAAMA 840 ACYQEYGIYA DIEGIAAMSK LAFGNVKNYN SAALSIQKKY RGYKGRKEFL AKRQKVVKIQ 900 AYVRGYQVRK HYKVICWAVG ILDKVVLRWR RKGVGLKGFR QDVESREESE DEDILKVFRK 960 EKVDGAVNEA FSRVLSMTNS PDARQQYQRV LKRYCQTKAE LGKTETLGTD GGDEDDDVLL 1020 DIADMRYENL RTLP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00070150001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189200 | 0.0 | AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013620826.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 4-like | ||||
Refseq | XP_013671039.1 | 0.0 | calmodulin-binding transcription activator 4-like | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A078FI61 | 0.0 | A0A078FI61_BRANA; BnaA02g13050D protein | ||||
STRING | Bo2g055720.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6476 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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