PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00069896001
Common NameGSBRNA2T00069896001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 492aa    MW: 54995.1 Da    PI: 6.7778
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00069896001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.33.3e-163165135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  GSBRNA2T00069896001 31 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 65
                         ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-122469No hitNo description
SMARTSM004014.1E-92579IPR000679Zinc finger, GATA-type
CDDcd002029.13E-163078No hitNo description
PROSITE profilePS5011411.23164IPR000679Zinc finger, GATA-type
PfamPF003205.6E-143165IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.9E-133164IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
PfamPF139199.1E-7258352IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
METVGIFCRS LFHASWTLLQ IKEEMGKQGP CYHCGVTSTP LWRNGPPEKP VLCNACGSRW  60
RTKGSLVNYT PVRARAEGDE VEIDDRRGGQ KMMMINGMSM NKKRKPYQEN FTVKRTNLEF  120
SNGFKKRSLE EEASNNRSSS GSVVSNSESC DQSNVWETSF AACKKRTCVG RPKAASSSVE  180
KLTKDLFSIL QEQQSSCCVS GTSEEELLFE NESPMVIGHG SVLLIDPHED SEASSLLVES  240
SKSSSIHSHN FGGKAIKQEQ LKRTKSQVLG RHSLPLCNID LKYVFNFDEF KEKFTKEEQQ  300
KLMKLLPQVD LPDSLLSMFE SSQFKENFSL FQQFVADGVF GTSSSSGSKL EEFKTLAKLA  360
LSDPNKSHML ESYQMLKEQR KGIEDSSRVS NQTPSDNHSL VTIERPCESL NQNFSETRVV  420
MKSPKEVMKI RSKHIETKEI IENSVSSLNH MSYGGSMVCG GYEDNDNSAQ DLLLDVPSNG  480
SFPQAELLHM I*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00069896001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834950.0AC183495.1 Brassica oleracea Contig A, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612520.10.0PREDICTED: GATA transcription factor 27-like isoform X1
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLA0A078HUW70.0A0A078HUW7_BRANA; BnaC02g33240D protein
STRINGBo2g132210.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]