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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00069416001 | ||||||||
Common Name | GSBRNA2T00069416001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 684aa MW: 76625.8 Da PI: 8.6034 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.1 | 3.7e-14 | 32 | 106 | 12 | 95 |
HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 k+ +p f+++h g + + k +l++ s ++W+vk+ ++++ +t+GW++F+ a++L++gD+ vF+++g++ f +v+ GSBRNA2T00069416001 32 KN---NIPVAFFSTHikGRNDHI-KIAKLRTdASDKTWKVKM--DGSK----FTDGWEDFAVAHDLRVGDITVFRHEGEMVF--HVT 106 33...59********97333333.34555554999*******..9999....9**********************9998888..665 PP | |||||||
2 | B3 | 59 | 8.2e-19 | 169 | 258 | 7 | 98 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++++lk++ l+l ++f++++g++k +s +++l++e g +W++ l++ k+ ++++l+ GW F++ ng+k+ D ++Fkl++ +++++v+ + GSBRNA2T00069416001 169 SASSLKHNKLYLGREFVTSNGLNKGCS-EIVLKNEGGGRWTLPLKHYKSINHTYLGPGWTTFCQVNGIKAEDAFMFKLVR-TGEKPVLCL 256 678999******************998.****************99********************************98.777789888 PP E- CS B3 97 fr 98 + GSBRNA2T00069416001 257 CP 258 85 PP | |||||||
3 | B3 | 45.9 | 1e-14 | 310 | 396 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ++ +++ + k+ +l++p f+ +h g + k +l++ s ++W+vk+ ++ + lt GW++F+ a++L++gD++vF+++g+ GSBRNA2T00069416001 310 LTLTLTQKAVKRYQLTIPVAFFLKHvqGRN-DHIKIAKLTTaASDKTWTVKM--DGLK----LTHGWEDFAVAHDLRVGDMIVFRHEGEL 392 56666777888889***********96333.33346667775788*******..6666....***********************87754 PP EE..EE CS B3 89 efelvv 94 f +v GSBRNA2T00069416001 393 AF--HV 396 44..44 PP | |||||||
4 | B3 | 60.3 | 3.4e-19 | 433 | 525 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 + +++++l+++rl+lp +fa+++g++k ++ +++l + +grsW++kl+++k++ +++ + GW++F+ +ng+ g ++kl++ +++ +v GSBRNA2T00069416001 433 AKVSASNLRLDRLYLPMSFARTNGLDKMSGEEIILLNGEGRSWSLKLKHDKSDMHTFVRPGWRRFCAENGMSHGHY-TLKLVR-NSGPPV 520 5568999*******************************************************************96.999987.777799 PP EEEE- CS B3 94 vkvfr 98 +k++ GSBRNA2T00069416001 521 IKLCG 525 99986 PP | |||||||
5 | B3 | 61.1 | 1.9e-19 | 548 | 639 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++s++lk++ l+l kkf+ e+g++ +s +++l++e+g +W++ l++ + +++l+ GW+ F++ n++k+gD++ Fkl+g ++ ++v+ GSBRNA2T00069416001 548 SVTSNSLKTDKLYLGKKFVIENGLDRGCS-EMVLKNEWGGRWSLALRFYESAYQTYLGPGWRTFCQVNEIKVGDSFRFKLVG-TGDNPVL 635 57999********************9887.******************999999**************************99.5555777 PP EEE- CS B3 95 kvfr 98 ++ GSBRNA2T00069416001 636 LLCT 639 7775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.378 | 18 | 111 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.1E-15 | 20 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.3E-14 | 20 | 111 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.06E-12 | 22 | 106 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-17 | 22 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.7E-8 | 32 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-17 | 161 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-16 | 163 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.802 | 163 | 259 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.33E-13 | 163 | 258 | No hit | No description |
SMART | SM01019 | 2.2E-20 | 164 | 260 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-17 | 168 | 258 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-21 | 299 | 412 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-17 | 307 | 408 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.44E-11 | 308 | 397 | No hit | No description |
PROSITE profile | PS50863 | 12.619 | 309 | 402 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.4E-10 | 309 | 392 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.7E-14 | 309 | 402 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-17 | 423 | 520 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.37E-15 | 426 | 525 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.90E-14 | 430 | 524 | No hit | No description |
PROSITE profile | PS50863 | 12.915 | 430 | 527 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-24 | 431 | 527 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-18 | 432 | 525 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.2E-16 | 540 | 638 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-17 | 542 | 643 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.79E-15 | 544 | 638 | No hit | No description |
PROSITE profile | PS50863 | 13.846 | 544 | 640 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.7E-20 | 545 | 641 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-18 | 548 | 640 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 684 aa Download sequence Send to blast |
MVDQSLLPAS SSRLPHSPRI LLSFSFISSQ EKNNIPVAFF STHIKGRNDH IKIAKLRTDA 60 SDKTWKVKMD GSKFTDGWED FAVAHDLRVG DITVFRHEGE MVFHVTALGP SFCEIQYTSS 120 HNINDDTHDQ TNNIVTGNSS REKRKRVKKN PKPVPQASLH SSCYVGSVSA SSLKHNKLYL 180 GREFVTSNGL NKGCSEIVLK NEGGGRWTLP LKHYKSINHT YLGPGWTTFC QVNGIKAEDA 240 FMFKLVRTGE KPVLCLCPEE SSHRDKTPVE CLEDSDDVNP LSSSSKSKES KEESLGDKRA 300 SSSYSEDRFL TLTLTQKAVK RYQLTIPVAF FLKHVQGRND HIKIAKLTTA ASDKTWTVKM 360 DGLKLTHGWE DFAVAHDLRV GDMIVFRHEG ELAFHVTTMG PSCCEIQYTH NINHNHTNNI 420 IESSSSDNSL FVAKVSASNL RLDRLYLPMS FARTNGLDKM SGEEIILLNG EGRSWSLKLK 480 HDKSDMHTFV RPGWRRFCAE NGMSHGHYTL KLVRNSGPPV IKLCGQVHNR PKPVPVVSSL 540 HHSCFVGSVT SNSLKTDKLY LGKKFVIENG LDRGCSEMVL KNEWGGRWSL ALRFYESAYQ 600 TYLGPGWRTF CQVNEIKVGD SFRFKLVGTG DNPVLLLCTR KTPLECPEES SGSDTSSGDD 660 SSEPQESEEE KFLEMQNTKR KPL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00069416001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB608563 | 8e-67 | AB608563.1 Raphanus sativus DNA, microsatellite locus RsSR037, cultivar: rat-tail radish. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013594668.1 | 0.0 | PREDICTED: B3 domain-containing protein REM17-like | ||||
Swissprot | Q84WP3 | 1e-124 | REM17_ARATH; B3 domain-containing protein REM17 | ||||
TrEMBL | A0A078HNX1 | 0.0 | A0A078HNX1_BRANA; BnaA07g09400D protein | ||||
STRING | Bra012445.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5781 | 16 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 1e-118 | B3 family protein |
Publications ? help Back to Top | |||
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