PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00069416001
Common NameGSBRNA2T00069416001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 684aa    MW: 76625.8 Da    PI: 8.6034
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00069416001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.7e-14321061295
                          HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3  12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          k+    +p  f+++h  g + +  k  +l++  s ++W+vk+  ++++    +t+GW++F+ a++L++gD+ vF+++g++ f  +v+
  GSBRNA2T00069416001  32 KN---NIPVAFFSTHikGRNDHI-KIAKLRTdASDKTWKVKM--DGSK----FTDGWEDFAVAHDLRVGDITVFRHEGEMVF--HVT 106
                          33...59********97333333.34555554999*******..9999....9**********************9998888..665 PP

2B3598.2e-19169258798
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          ++++lk++ l+l ++f++++g++k +s +++l++e g +W++ l++ k+ ++++l+ GW  F++ ng+k+ D ++Fkl++ +++++v+ +
  GSBRNA2T00069416001 169 SASSLKHNKLYLGREFVTSNGLNKGCS-EIVLKNEGGGRWTLPLKHYKSINHTYLGPGWTTFCQVNGIKAEDAFMFKLVR-TGEKPVLCL 256
                          678999******************998.****************99********************************98.777789888 PP

                          E- CS
                   B3  97 fr 98 
                          + 
  GSBRNA2T00069416001 257 CP 258
                          85 PP

3B345.91e-14310396294
                          EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          ++ +++  + k+ +l++p  f+ +h  g +    k  +l++  s ++W+vk+  ++ +    lt GW++F+ a++L++gD++vF+++g+ 
  GSBRNA2T00069416001 310 LTLTLTQKAVKRYQLTIPVAFFLKHvqGRN-DHIKIAKLTTaASDKTWTVKM--DGLK----LTHGWEDFAVAHDLRVGDMIVFRHEGEL 392
                          56666777888889***********96333.33346667775788*******..6666....***********************87754 PP

                          EE..EE CS
                   B3  89 efelvv 94 
                           f  +v
  GSBRNA2T00069416001 393 AF--HV 396
                          44..44 PP

4B360.33.4e-19433525498
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + +++++l+++rl+lp +fa+++g++k ++ +++l + +grsW++kl+++k++ +++ + GW++F+ +ng+  g   ++kl++ +++ +v
  GSBRNA2T00069416001 433 AKVSASNLRLDRLYLPMSFARTNGLDKMSGEEIILLNGEGRSWSLKLKHDKSDMHTFVRPGWRRFCAENGMSHGHY-TLKLVR-NSGPPV 520
                          5568999*******************************************************************96.999987.777799 PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          +k++ 
  GSBRNA2T00069416001 521 IKLCG 525
                          99986 PP

5B361.11.9e-19548639598
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                           ++s++lk++ l+l kkf+ e+g++  +s +++l++e+g +W++ l++  +  +++l+ GW+ F++ n++k+gD++ Fkl+g ++ ++v+
  GSBRNA2T00069416001 548 SVTSNSLKTDKLYLGKKFVIENGLDRGCS-EMVLKNEWGGRWSLALRFYESAYQTYLGPGWRTFCQVNEIKVGDSFRFKLVG-TGDNPVL 635
                          57999********************9887.******************999999**************************99.5555777 PP

                          EEE- CS
                   B3  95 kvfr 98 
                           ++ 
  GSBRNA2T00069416001 636 LLCT 639
                          7775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.37818111IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-1520118IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-1420111IPR003340B3 DNA binding domain
CDDcd100174.06E-1222106No hitNo description
Gene3DG3DSA:2.40.330.104.6E-1722120IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-832103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-17161259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-16163260IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.802163259IPR003340B3 DNA binding domain
CDDcd100176.33E-13163258No hitNo description
SMARTSM010192.2E-20164260IPR003340B3 DNA binding domain
PfamPF023622.1E-17168258IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-21299412IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-17307408IPR015300DNA-binding pseudobarrel domain
CDDcd100174.44E-11308397No hitNo description
PROSITE profilePS5086312.619309402IPR003340B3 DNA binding domain
PfamPF023626.4E-10309392IPR003340B3 DNA binding domain
SMARTSM010197.7E-14309402IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-17423520IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-15426525IPR015300DNA-binding pseudobarrel domain
CDDcd100178.90E-14430524No hitNo description
PROSITE profilePS5086312.915430527IPR003340B3 DNA binding domain
SMARTSM010193.3E-24431527IPR003340B3 DNA binding domain
PfamPF023623.9E-18432525IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-16540638IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-17542643IPR015300DNA-binding pseudobarrel domain
CDDcd100172.79E-15544638No hitNo description
PROSITE profilePS5086313.846544640IPR003340B3 DNA binding domain
SMARTSM010195.7E-20545641IPR003340B3 DNA binding domain
PfamPF023622.5E-18548640IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MVDQSLLPAS SSRLPHSPRI LLSFSFISSQ EKNNIPVAFF STHIKGRNDH IKIAKLRTDA  60
SDKTWKVKMD GSKFTDGWED FAVAHDLRVG DITVFRHEGE MVFHVTALGP SFCEIQYTSS  120
HNINDDTHDQ TNNIVTGNSS REKRKRVKKN PKPVPQASLH SSCYVGSVSA SSLKHNKLYL  180
GREFVTSNGL NKGCSEIVLK NEGGGRWTLP LKHYKSINHT YLGPGWTTFC QVNGIKAEDA  240
FMFKLVRTGE KPVLCLCPEE SSHRDKTPVE CLEDSDDVNP LSSSSKSKES KEESLGDKRA  300
SSSYSEDRFL TLTLTQKAVK RYQLTIPVAF FLKHVQGRND HIKIAKLTTA ASDKTWTVKM  360
DGLKLTHGWE DFAVAHDLRV GDMIVFRHEG ELAFHVTTMG PSCCEIQYTH NINHNHTNNI  420
IESSSSDNSL FVAKVSASNL RLDRLYLPMS FARTNGLDKM SGEEIILLNG EGRSWSLKLK  480
HDKSDMHTFV RPGWRRFCAE NGMSHGHYTL KLVRNSGPPV IKLCGQVHNR PKPVPVVSSL  540
HHSCFVGSVT SNSLKTDKLY LGKKFVIENG LDRGCSEMVL KNEWGGRWSL ALRFYESAYQ  600
TYLGPGWRTF CQVNEIKVGD SFRFKLVGTG DNPVLLLCTR KTPLECPEES SGSDTSSGDD  660
SSEPQESEEE KFLEMQNTKR KPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00069416001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6085638e-67AB608563.1 Raphanus sativus DNA, microsatellite locus RsSR037, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594668.10.0PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP31e-124REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A078HNX10.0A0A078HNX1_BRANA; BnaA07g09400D protein
STRINGBra012445.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-118B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]