PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00069409001
Common NameGSBRNA2T00069409001, LOC106356359
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 341aa    MW: 37737.2 Da    PI: 8.8576
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00069409001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05527123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C+k F++  +L  Hir H
  GSBRNA2T00069409001  5 YVCKFCNKKFPSGKSLGGHIRIH 27
                         9********************99 PP
2zf-C2H212.30.00052288310123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F++   L  H r+H
  GSBRNA2T00069409001 288 HECPICFRVFKSGQALGGHKRSH 310
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.5E-6229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.03E-7230No hitNo description
SMARTSM003550.0036527IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.552532IPR007087Zinc finger, C2H2
PfamPF139125.2E-6524IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576674.28E-5285314No hitNo description
PfamPF139121.0E-11287311IPR007087Zinc finger, C2H2
SMARTSM003550.14288310IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.034288315IPR007087Zinc finger, C2H2
PROSITE patternPS000280290310IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEKKYVCKFC NKKFPSGKSL GGHIRIHSND YSVASDSFNG KNPKMKNNNK KRLVEHKQLC  60
CGECGSNHMD CHCVVEKMVM DSQSDTETTS SAPTRKRSKK LMKQSNSESF SSSSASEIDQ  120
EHKDTALSLM MMSIDSKGHN LMVNSLAESS ENNSEILETK SSSGEQLNVK NQGLKTDKVA  180
VDDQLRSAND ADSYSSDSDY FMNGPKKSDS DISVEGSLRN TELNSFKNGD ELGVKEGGSK  240
YQLRKSKRVL PSSYESDSCA DRNMKIHRSG DCKMVKKAVG ANRSSKVHEC PICFRVFKSG  300
QALGGHKRSH SIESQEQRIK HKAAVDMRID RNLPAHDVDV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00069409001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651578.10.0zinc finger protein ZAT9
RefseqXP_022545258.10.0zinc finger protein ZAT9-like
TrEMBLA0A078HSH60.0A0A078HSH6_BRANA; BnaA07g09460D protein
STRINGBra012452.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.12e-72C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]