PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00068588001

Common Name

GSBRNA2T00068588001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 279aa MW: 32244.7 Da PI: 11.0131

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00068588001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.6	2.5e-21	53	134	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+l+Lie +++ +l+rg lk +Wee++ ++ r+ g+ rs++qC++k+e+l+kr+++++++++ s +p+++q+e GSBRNA2T00068588001 53 WTQNETLLLIESHKDKCYSLGRGPLKPSHWEEIAVAVsaRSDGVDRSATQCRHKMEKLRKRFRAERQSMGPI-----SLWPFYSQME 134 ***********************************99999************************84.....79*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.4E-18	53	136	No hit	No description
PROSITE profile	PS50090	6.133	53	111	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MAIDKKCQRR DRNTIIRPKI QKSTPSFAAT SPQKNPQPST SSAVARRTQP VLWTQNETLL 60 LIESHKDKCY SLGRGPLKPS HWEEIAVAVS ARSDGVDRSA TQCRHKMEKL RKRFRAERQS 120 MGPISLWPFY SQMEELDNNN NNNPAPISAR SLTRLPPSSS HHEDEDEEED ERQRKSRSIN 180 YIVRRPGTVN RGLLQWGQKE RSKTKRKDGE ERRRRRARGV ASEIRSFAER VMVMEKKKME 240 FAEETVKLRK EMEIKRVKLI QSSQAQILQS LHTVLGSF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00068588001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597572.1	1e-115	PREDICTED: trihelix transcription factor ASIL1
Refseq	XP_013731132.1	1e-115	trihelix transcription factor ASIL1
TrEMBL	A0A078HMM7	0.0	A0A078HMM7_BRANA; BnaA09g10370D protein
STRING	Bostr.19424s0134.1.p	1e-115	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10281	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	2e-98	Trihelix family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]