PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00068086001
Common NameGSBRNA2T00068086001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 315aa    MW: 35929.3 Da    PI: 6.0841
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00068086001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35171092103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F+ k+y++++d++++ li+w    nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k
  GSBRNA2T00068086001  17 FVVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFLRGQK 97 
                          9********************999*****************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r+k++
  GSBRNA2T00068086001  98 HLLKNIARRKHA 109
                          *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-5513106IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.05E-3314106IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-3714106IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.5E-181740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-3017106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-185567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEDDNNNNTN TNVIAPFVVK TYQMVNDPST DWLITWGPAH NSFIVVDPLD FSQRILPAYF  60
KHNNFSSFVR QLNTYGFRKV DPDRWEFANE HFLRGQKHLL KNIARRKHAR GVIYGQEMED  120
GEIVREIERL KDEQRDLELE IQRMNQRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE  180
RTKLVSDKKK RRVTVKSEDE EENGRVFGII SPSPSPPENV YRTQPPENSV RWVVPMQKPG  240
NFGSYNETGL ISTSSTSSSL TSTLSLPESV NGDGGGCGSI QGETRYREAA TFGGVVESSP  300
QTPPYPFSLF RGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-261410626129Heat shock factor protein 1
5d5v_B8e-261410626129Heat shock factor protein 1
5d5v_D8e-261410626129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187191KKKRR
2187192KKKRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.117900.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00068086001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0561111e-165AY056111.1 Arabidopsis thaliana AT3g24520/MOB24_5 mRNA, complete cds.
GenBankAY0726141e-165AY072614.1 Arabidopsis thaliana AT3g24520/MOB24_5 mRNA, complete cds.
GenBankHQ3223821e-165HQ322382.1 Arabidopsis thaliana heat shock factor (HSF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022562701.10.0heat stress transcription factor C-1-like
SwissprotQ9LV521e-151HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A078HM680.0A0A078HM68_BRANA; BnaC07g07130D protein
STRINGBo7g033000.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-150heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]