PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00067727001

Common Name

GSBRNA2T00067727001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 307aa MW: 34421.5 Da PI: 7.9757

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00067727001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	95.8	3.4e-30	86	142	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++YkeClkNhAa++Gg+a+DGCgEfmps g++g+++a++C+ C+CHRnFHR+eve e GSBRNA2T00067727001 86 MIKYKECLKNHAAAMGGNATDGCGEFMPS-GADGSIEAFTCSVCNCHRNFHRKEVEGE 142 689***********************9.999*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	6.0E-27	87	139	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-28	87	149	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.9E-29	88	139	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.241	89	138	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	6.58E-19	206	271	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-28	207	272	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.2E-25	213	269	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MEIASQEDHD IRIPLSTTFV GSGGGHGHMI HHHHDHHASD SAPPTHNHNS ITTTQPPQMQ 60 LHGSGHGNSN DHHHHVGYNA IIKKPMIKYK ECLKNHAAAM GGNATDGCGE FMPSGADGSI 120 EAFTCSVCNC HRNFHRKEVE GETTATAISS YHQPPPPRKL MVNHHNIRSA MPHQMIMPIG 180 VSNYRYMHNL ESGDFMEQDG VTTASRPPPY NQKKRFRTKF TPDQKEKMLS FAEKVGWKIQ 240 RQEDCVVQRL CEEIGVKRRV LKVWMHNNKL HFSNKNTSNN INLEGNDNDK INNVNNVDVS 300 GNNDMI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-22	214	269	18	73	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269\|PubMed:22319055}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00067727001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013693598.1	0.0	zinc-finger homeodomain protein 4-like
Swissprot	Q9M9S0	1e-169	ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBL	A0A078HNY9	0.0	A0A078HNY9_BRANA; BnaC05g10680D protein
STRING	Bra026219.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3339	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	1e-148	homeobox protein 31

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]