PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00067662001

Common Name

GSBRNA2T00067662001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GATA

Protein Properties

Length: 491aa MW: 54328.9 Da PI: 7.4577

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00067662001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.3	3.3e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ GSBRNA2T00067662001 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41 **************88888*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	6.5E-10	1	55	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.66E-11	5	46	No hit	No description
CDD	cd00202	2.53E-16	6	55	No hit	No description
Pfam	PF00320	5.6E-14	7	41	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.2	7	40	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	7	32	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	9.8E-13	7	40	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF13919	5.2E-10	265	358	IPR028020	ASX homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHS RADGEENKDD 60 QRYQRMKSIS VNNKYKETKT LKRKAIQEPV LELNYGFKKA VVEEDASNRS SSGSAISNSE 120 SCADGSELTG PSQSNGWDTT VPCKRRTCVG LRPKTSSVEK LTQDLYNILQ EQQSSVSSEE 180 EDLLFENEML SMVSVEIGHG SVLMRNPHSF ARGEVSEEAS SLSSVENKSS ISDAYSSHSV 240 KRAEIGAERG SVSVGQSVKE DQLKRTKSQN GRVHVLGSHG SPLCSIDLKD VFNFDEFIEQ 300 FTEEEQKKLM RLLPQIDSVN LPDSLRMMFE SAQFKENFSL FQKLIADGVF EMPSTSSEAI 360 LEEMRSFKKL ALSDFSKSRL VESYNLLKEG DKGSATTSRS SNPNVHKNIV SIKRRCENQT 420 QLKSESRGLM RSPKSVTKMK ASHEGNGSCF SQRSLASVFA QGNCSSDQDL LLLDLPSNGS 480 FPQAELLHQL *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHS RADGEENKDD  60
QRYQRMKSIS VNNKYKETKT LKRKAIQEPV LELNYGFKKA VVEEDASNRS SSGSAISNSE  120
SCADGSELTG PSQSNGWDTT VPCKRRTCVG LRPKTSSVEK LTQDLYNILQ EQQSSVSSEE  180
EDLLFENEML SMVSVEIGHG SVLMRNPHSF ARGEVSEEAS SLSSVENKSS ISDAYSSHSV  240
KRAEIGAERG SVSVGQSVKE DQLKRTKSQN GRVHVLGSHG SPLCSIDLKD VFNFDEFIEQ  300
FTEEEQKKLM RLLPQIDSVN LPDSLRMMFE SAQFKENFSL FQKLIADGVF EMPSTSSEAI  360
LEEMRSFKKL ALSDFSKSRL VESYNLLKEG DKGSATTSRS SNPNVHKNIV SIKRRCENQT  420
QLKSESRGLM RSPKSVTKMK ASHEGNGSCF SQRSLASVFA QGNCSSDQDL LLLDLPSNGS  480
FPQAELLHQL *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.24747	0.0	root\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00067662001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353240	0.0	AK353240.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-J12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013615880.1	0.0	PREDICTED: GATA transcription factor 26 isoform X1
Refseq	XP_013724827.1	0.0	GATA transcription factor 26-like
Swissprot	Q8W4H1	0.0	GAT26_ARATH; GATA transcription factor 26
TrEMBL	A0A078JK72	0.0	A0A078JK72_BRANA; BnaCnng56940D protein
STRING	Bo1g017650.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1606	27	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	0.0	GATA transcription factor 26

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]