PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00067196001

Common Name

GSBRNA2T00067196001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 447aa MW: 48466.9 Da PI: 9.8327

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00067196001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	199	220	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H GSBRNA2T00067196001 199 CSQCGEVFPKLESLELHQAVrH 220 ******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.037	197	225	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	199	220	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	4.6E-21	222	442	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.3E-13	224	443	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MALLTFLPEN AVSPKHTPPP NKRKNREINH TNQTQKPHKP QKQKAVAPQK QPSSWDQIKN 60 LLTCKQIEGS RIHDPSKNSQ PGPSTTTHLL SPSKIGSSCS SICRFRDVAH GNTRVVDRAD 120 HSPDVANSAT PDSETRLLTR KPGQHGSSSS SRSLRYGSTT SSATTSFRAM QFRKLSGCYE 180 CHMIVDPSKY PISPRVRACS QCGEVFPKLE SLELHQAVRH AVSELGPEDS GRNIVEIIFK 240 SSWLKKDSPI CKIERILKVQ NTQRTIQRFE DCRDAVKARA LHTTRKDARC AADGNELLRF 300 HCTTLTCSLG SRGSSSLCSN LPNCGVCNVI RHGFQGKSGA GGANAGVRTT ASSGRADDLL 360 RCSDDARRVM LVCRVIAGCV KRVDSTAAGK KSPVEDNSTA GVSSTGGVFD SVAVNAGAYS 420 NLEELVVYNP RAILPCFVVI YKVVES*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MALLTFLPEN AVSPKHTPPP NKRKNREINH TNQTQKPHKP QKQKAVAPQK QPSSWDQIKN  60
LLTCKQIEGS RIHDPSKNSQ PGPSTTTHLL SPSKIGSSCS SICRFRDVAH GNTRVVDRAD  120
HSPDVANSAT PDSETRLLTR KPGQHGSSSS SRSLRYGSTT SSATTSFRAM QFRKLSGCYE  180
CHMIVDPSKY PISPRVRACS QCGEVFPKLE SLELHQAVRH AVSELGPEDS GRNIVEIIFK  240
SSWLKKDSPI CKIERILKVQ NTQRTIQRFE DCRDAVKARA LHTTRKDARC AADGNELLRF  300
HCTTLTCSLG SRGSSSLCSN LPNCGVCNVI RHGFQGKSGA GGANAGVRTT ASSGRADDLL  360
RCSDDARRVM LVCRVIAGCV KRVDSTAAGK KSPVEDNSTA GVSSTGGVFD SVAVNAGAYS  420
NLEELVVYNP RAILPCFVVI YKVVES*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13573	1e-178	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00067196001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352975	0.0	AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013693392.1	0.0	uncharacterized protein LOC106397344
TrEMBL	A0A078HMF4	0.0	A0A078HMF4_BRANA; BnaA02g17410D protein
STRING	Bo2g085310.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	0.0	C2H2-like zinc finger protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]