PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066984001
Common NameGSBRNA2T00066984001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 305aa    MW: 33011.3 Da    PI: 10.2412
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066984001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.4e-31228285359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+a+d +++++tYeg+Hnh+
  GSBRNA2T00066984001 228 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAADDSSMLIVTYEGDHNHS 285
                          99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.1E-15178224IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.7E-33215285IPR003657WRKY domain
PROSITE profilePS5081130.607221287IPR003657WRKY domain
SuperFamilySSF1182908.11E-27224286IPR003657WRKY domain
SMARTSM007741.7E-37226286IPR003657WRKY domain
PfamPF031063.7E-27228284IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAVELMTRNY ISGVGVDSLA VQEAAASGLK SMENFIGLMS HESFNSNQPS SSSSAAITDL  60
ELARNTTADA AVSKFKRVIS LLDRTPTGHA RFRRAPVISP IQEIKPTPFQ APPQIHKGSF  120
SSPIKTIEFS SLSSVTAESE HMKHHHHLSS HHHRPSETAP FGTQSLSTTV SSFSKPTKRK  180
CNSENHIAGK CASASSGRCH CSKKRKIKQR RVIRVPAISA KMSDVPPDDY SWRKYGQKPI  240
KGSPHPRGYY KCSSVRGCPA RKHVERAADD SSMLIVTYEG DHNHSLSAAD LAGAAVANLI  300
LESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22214286273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066984001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300360.0KF430036.1 Brassica rapa WRKY transcription factor 15 (WRKY15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288916.10.0probable WRKY transcription factor 15
SwissprotO221761e-167WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A078HMV40.0A0A078HMV4_BRANA; BnaA04g13570D protein
STRINGBra032174.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.11e-139WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  4. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]